JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5H14_chr3_98142479_98161614	0/0	c0007	933	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0008	933	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0009	933	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0010	933	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0011	933	1	0	0	1	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0012	933	1	1	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H15_chr3_98161696_98174774	0/0	c0001	942	162	25	33	95	0	9	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	1/1	c0002	942	111	6	23	56	5	19	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0003	942	70	26	15	13	6	10	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0004	942	27	0	1	26	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0005	941	15	1	0	7	3	4	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0006	942	12	12	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0007	942	10	10	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0008	943	8	8	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0009	942	5	4	1	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0010	942	4	0	0	4	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0011	942	3	1	2	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0012	942	2	2	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0013	942	2	0	1	0	1	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0014	942	2	0	0	2	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0015	942	2	0	0	2	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0016	942	2	0	0	2	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0017	942	1	0	0	1	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0018	941	1	0	0	1	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0019	941	1	0	0	1	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0020	942	1	1	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0021	942	1	1	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0022	942	1	0	0	0	1	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H15_chr3_98161696_98174774	0/0	c0023	943	1	1	0	0	0	0	copy fasta	OR5H15	chr3	98161696	98174774
OR5H1_chr3_98125721_98143548	1/1	c0001	942	143	13	29	81	7	11	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0002	942	140	25	27	65	5	18	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0003	942	81	39	7	25	2	8	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0004	942	22	1	9	12	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0005	942	6	1	0	5	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0007	942	4	4	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0008	942	4	3	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0009	942	3	0	0	0	0	3	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0010	942	2	0	0	0	2	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0011	942	2	0	0	2	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0013	942	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0015	942	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0016	942	1	0	1	0	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0017	930	1	0	0	1	0	0	copy fasta	OR5H1	chr3	98125721	98143548
OR5H1_chr3_98125721_98143548	0/0	c0018	942	1	0	0	0	0	1	copy fasta	OR5H1	chr3	98125721	98143548
OR5H2_chr3_98277505_98289070	0/0	c0001	930	182	32	21	115	3	11	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	1/0	c0002	930	158	28	38	54	14	23	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/1	c0003	930	74	17	16	35	1	4	copy fasta	OR5H2	chr3	98277505	98289070