JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5H2_chr3_98277505_98289070	0/0	c0004	930	15	15	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0005	930	3	3	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0006	930	2	2	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0007	930	2	0	1	0	0	1	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0008	930	1	1	0	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0009	930	1	0	0	0	0	1	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0010	930	1	0	1	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H2_chr3_98277505_98289070	0/0	c0011	930	1	0	1	0	0	0	copy fasta	OR5H2	chr3	98277505	98289070
OR5H6_chr3_98259244_98270356	0/0	c0001	930	141	3	13	115	3	7	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	1/1	c0002	930	115	11	30	55	5	12	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0003	921	91	16	24	26	10	15	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0004	930	33	15	6	8	0	4	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0005	930	11	9	2	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0006	930	10	9	1	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0007	930	8	8	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0008	930	7	7	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0009	930	6	6	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0010	930	4	4	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0011	930	4	4	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0012	930	2	0	2	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0013	930	2	2	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0014	930	1	0	0	1	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0015	930	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0016	930	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0017	921	1	0	1	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0018	930	1	0	0	1	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0019	930	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0020	921	1	0	1	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5H6_chr3_98259244_98270356	0/0	c0021	930	1	1	0	0	0	0	copy fasta	OR5H6	chr3	98259244	98270356
OR5I1_chr11_55930456_55941400	1/1	c0001	945	363	65	56	193	11	36	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0002	945	35	8	4	17	3	3	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0003	945	7	7	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0004	945	7	0	5	0	2	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0005	945	5	4	1	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0006	945	5	1	2	0	2	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0008	945	3	3	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0009	945	2	0	0	2	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0010	945	2	2	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0011	945	1	1	0	0	0	0	copy fasta	OR5I1	chr11	55930456	55941400
OR5I1_chr11_55930456_55941400	0/0	c0012	945	1	0	0	0	0	1	copy fasta	OR5I1	chr11	55930456	55941400
OR5J2_chr11_56171618_56182556	1/0	c0001	939	381	79	62	187	16	36	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/1	c0002	939	39	6	4	23	0	5	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0003	939	6	5	1	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0004	939	3	0	3	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0005	939	2	2	0	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0006	939	2	0	0	0	0	2	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0007	939	2	2	0	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556