JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5J2_chr11_56171618_56182556	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0013	939	1	0	0	0	0	1	copy fasta	OR5J2	chr11	56171618	56182556
OR5J2_chr11_56171618_56182556	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR5J2	chr11	56171618	56182556
OR5K1_chr3_98458201_98477924	1/1	c0001	927	399	67	74	195	15	46	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0002	927	17	14	3	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0003	927	8	8	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0004	927	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0005	927	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0006	927	2	2	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0007	927	2	1	1	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0008	927	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0009	915	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0010	927	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0011	927	1	0	0	1	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0012	927	1	1	0	0	0	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K1_chr3_98458201_98477924	0/0	c0013	927	1	0	0	0	1	0	copy fasta	OR5K1	chr3	98458201	98477924
OR5K2_chr3_98492681_98503631	1/1	c0001	951	423	77	68	218	12	46	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0002	951	24	11	8	0	4	1	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0003	951	24	4	4	13	0	3	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0004	951	4	4	0	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0005	951	3	2	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0006	951	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0007	951	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0008	951	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0010	951	1	0	1	0	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0011	951	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K2_chr3_98492681_98503631	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR5K2	chr3	98492681	98503631
OR5K3_chr3_98385666_98396631	1/1	c0001	966	271	46	44	156	5	18	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0002	967	91	17	28	23	10	13	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0003	966	79	10	9	47	3	10	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0004	966	13	10	3	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0005	966	10	10	0	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0006	966	3	3	0	0	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0007	966	2	0	0	0	0	2	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0008	966	1	0	0	0	0	1	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0009	967	1	0	0	1	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K3_chr3_98385666_98396631	0/0	c0010	966	1	0	0	1	0	0	copy fasta	OR5K3	chr3	98385666	98396631
OR5K4_chr3_98348854_98359819	1/1	c0001	966	228	41	31	139	3	12	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0002	965	100	28	26	25	6	15	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0003	966	91	17	22	35	2	15	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0004	966	5	5	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0005	966	5	0	0	5	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0006	966	4	0	2	0	1	1	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0007	966	4	4	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0008	966	3	0	0	3	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0009	965	3	0	0	0	0	3	copy fasta	OR5K4	chr3	98348854	98359819