JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5K4_chr3_98348854_98359819	0/0	c0010	966	2	2	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0011	966	2	2	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0012	966	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0013	966	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0014	966	1	0	1	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0015	966	1	0	0	1	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5K4_chr3_98348854_98359819	0/0	c0016	966	1	1	0	0	0	0	copy fasta	OR5K4	chr3	98348854	98359819
OR5L1_chr11_55806367_55817476	1/1	c0001	936	384	56	60	210	15	41	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0002	936	29	8	4	11	3	3	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0003	936	8	7	1	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0004	936	5	5	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0005	936	3	3	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0006	936	3	3	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0007	936	2	2	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0008	936	1	1	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0010	936	1	0	0	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0012	936	1	0	0	0	0	1	copy fasta	OR5L1	chr11	55806367	55817476
OR5L1_chr11_55806367_55817476	0/0	c0013	936	1	0	1	0	0	0	copy fasta	OR5L1	chr11	55806367	55817476
OR5L2_chr11_55822219_55833154	1/1	c0001	936	361	44	64	198	13	40	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0002	936	31	8	4	13	3	3	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0003	936	29	18	7	0	2	2	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0004	936	8	7	1	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0005	936	5	5	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0006	936	3	3	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0007	936	2	2	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0008	936	2	2	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0014	936	1	0	0	0	0	1	copy fasta	OR5L2	chr11	55822219	55833154
OR5L2_chr11_55822219_55833154	0/0	c0015	936	1	0	0	1	0	0	copy fasta	OR5L2	chr11	55822219	55833154
OR5M10_chr11_56571774_56582721	0/0	c0001	948	261	32	48	152	5	24	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	1/1	c0002	948	89	38	14	26	2	7	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0003	948	64	2	8	43	3	8	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0004	948	11	10	1	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0005	940	7	1	1	0	4	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0006	948	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0007	948	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0008	948	1	0	0	0	0	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0009	948	1	1	0	0	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR5M10	chr11	56571774	56582721
OR5M10_chr11_56571774_56582721	0/0	c0011	948	1	0	0	0	0	1	copy fasta	OR5M10	chr11	56571774	56582721
OR5M11_chr11_56537340_56548257	0/0	c0001	918	270	34	43	153	10	30	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	1/1	c0002	918	98	51	14	22	2	7	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0003	918	24	1	1	17	0	5	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0004	918	18	0	0	17	0	1	copy fasta	OR5M11	chr11	56537340	56548257