JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5M11_chr11_56537340_56548257	0/0	c0005	918	7	1	1	0	4	1	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0006	918	3	3	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0007	918	2	2	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0008	918	2	1	1	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0009	918	1	1	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0010	918	1	0	0	1	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0011	918	1	1	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M11_chr11_56537340_56548257	0/0	c0012	918	1	1	0	0	0	0	copy fasta	OR5M11	chr11	56537340	56548257
OR5M1_chr11_56604236_56619874	0/0	c0001	948	168	27	32	86	2	21	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	1/1	c0002	948	126	44	19	38	9	14	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0003	944	64	2	8	43	3	8	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0004	948	6	5	1	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0005	948	4	4	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0006	948	4	4	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0007	948	3	3	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0009	948	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0010	948	1	0	1	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0011	948	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0012	944	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0013	948	1	0	1	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0014	948	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0015	948	1	0	0	0	0	1	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0016	948	1	0	0	1	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0017	948	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M1_chr11_56604236_56619874	0/0	c0018	948	1	1	0	0	0	0	copy fasta	OR5M1	chr11	56604236	56619874
OR5M3_chr11_56464274_56478352	1/1	c0001	924	354	75	62	171	9	35	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0002	924	61	2	12	35	3	9	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0003	924	9	0	0	9	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0004	924	5	5	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0005	924	5	1	2	0	2	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0006	924	4	4	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0007	924	3	3	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0008	924	3	3	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0009	924	2	0	0	2	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0010	924	2	2	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0011	924	1	0	0	1	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0012	924	1	1	0	0	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0013	924	1	0	0	1	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M3_chr11_56464274_56478352	0/0	c0014	924	1	0	0	1	0	0	copy fasta	OR5M3	chr11	56464274	56478352
OR5M8_chr11_56485435_56496370	1/1	c0001	936	419	87	71	203	12	44	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0002	936	3	3	0	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0003	936	2	0	0	2	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0004	936	2	1	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0005	936	1	0	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0006	936	1	0	0	1	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0007	936	1	0	0	1	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0008	936	1	0	1	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR5M8	chr11	56485435	56496370
OR5M8_chr11_56485435_56496370	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR5M8	chr11	56485435	56496370