JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5M9_chr11_56457469_56468401	1/1	c0001	933	410	69	69	212	14	44	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0002	933	7	7	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0003	933	7	7	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0004	933	3	3	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0005	933	3	0	1	0	2	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0006	933	3	3	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0007	933	2	2	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0008	933	2	0	0	2	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0009	933	2	2	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0010	933	2	0	0	2	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0011	933	1	1	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0012	933	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0013	933	1	0	0	0	0	1	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0014	933	1	0	0	0	0	1	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0016	933	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0017	933	1	1	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0018	933	1	0	0	1	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0019	933	1	1	0	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0020	933	1	0	1	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5M9_chr11_56457469_56468401	0/0	c0021	933	1	0	1	0	0	0	copy fasta	OR5M9	chr11	56457469	56468401
OR5P2_chr11_7790974_7801942	0/0	c0001	969	214	16	41	128	8	21	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/1	c0002	990	72	12	17	25	6	11	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0003	969	13	4	4	5	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0004	969	3	3	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0005	969	3	0	1	1	0	1	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0006	969	1	1	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0007	969	1	1	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0008	957	1	0	1	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0009	969	1	0	0	1	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0010	959	1	1	0	0	0	0	copy fasta	OR5P2	chr11	7790974	7801942
OR5P2_chr11_7790974_7801942	0/0	c0011	990	1	0	0	0	0	1	copy fasta	OR5P2	chr11	7790974	7801942
OR5P3_chr11_7819818_7835840	0/0	c0001	936	151	9	33	74	8	27	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0002	936	115	38	25	34	4	14	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0003	936	99	15	4	79	0	1	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0004	936	14	6	2	2	0	4	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0005	80	12	12	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0006	936	11	10	1	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0007	933	6	0	0	6	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0008	936	4	0	2	0	2	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0009	936	3	2	1	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0010	936	2	2	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0012	936	1	0	0	1	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0014	936	1	1	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5P3_chr11_7819818_7835840	0/0	c0015	936	1	1	0	0	0	0	copy fasta	OR5P3	chr11	7819818	7835840
OR5T1_chr11_56269154_56281819	0/0	c0001	981	169	20	29	94	7	19	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/1	c0002	981	104	49	9	34	4	7	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0003	981	82	18	21	32	3	8	copy fasta	OR5T1	chr11	56269154	56281819