JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP23_chr17_38423464_38517385	0/0	c0024	4476	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0025	4476	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0026	4476	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0027	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0028	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0029	4476	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0030	4476	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0031	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0032	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0033	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0034	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0035	4477	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0036	4477	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0037	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0038	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0039	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0040	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0041	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0042	4476	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0043	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0044	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0045	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0046	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0047	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0048	4476	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0049	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0050	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0051	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0052	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0053	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0054	4476	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0055	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0056	4476	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0057	4476	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0058	4476	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0059	4476	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP24_chr4_85470150_86007666	0/0	c0001	2247	46	19	14	4	4	5	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0002	2247	22	8	8	1	0	5	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0003	2247	13	6	2	1	0	4	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0004	2247	7	6	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0005	2247	6	6	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0006	2247	3	3	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0007	2247	3	3	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0008	2247	2	2	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0009	2247	1	0	0	1	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0010	2247	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0011	2247	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0012	2247	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0013	2247	1	0	0	1	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	c0014	2247	1	0	1	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666