JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5T1_chr11_56269154_56281819	0/0	c0004	981	15	0	5	10	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0005	981	4	4	0	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0006	981	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0007	981	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0008	981	1	1	0	0	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0009	981	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T1_chr11_56269154_56281819	0/0	c0010	981	1	0	0	1	0	0	copy fasta	OR5T1	chr11	56269154	56281819
OR5T2_chr11_56226282_56239255	0/0	c0001	957	334	62	57	164	14	37	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/1	c0002	957	42	8	4	24	0	5	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0003	957	27	15	10	0	1	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0004	957	14	0	0	13	0	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0005	957	7	6	1	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0006	957	6	0	4	0	1	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0007	957	5	5	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0008	957	5	1	2	0	2	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0009	957	1	0	0	0	0	1	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0010	957	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0011	957	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0012	957	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0013	957	1	1	0	0	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0014	957	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T2_chr11_56226282_56239255	0/0	c0015	957	1	0	0	1	0	0	copy fasta	OR5T2	chr11	56226282	56239255
OR5T3_chr11_56247254_56258222	0/1	c0001	969	296	72	57	125	8	33	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0002	969	27	0	1	26	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0003	969	19	0	0	18	0	1	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0004	969	8	4	2	0	2	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0005	969	6	5	1	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0006	969	5	5	0	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0007	969	5	5	0	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0008	985	4	3	1	0	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5T3_chr11_56247254_56258222	0/0	c0009	969	1	0	0	1	0	0	copy fasta	OR5T3	chr11	56247254	56258222
OR5V1_chr6_29348749_29373865	0/1	c0001	966	238	55	41	109	8	24	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0002	966	121	15	18	68	3	17	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0003	966	23	15	7	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0004	966	19	0	1	18	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0005	966	12	5	3	0	3	1	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0006	966	5	3	2	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0007	966	2	0	2	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0008	966	2	0	0	0	0	2	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0009	966	2	2	0	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0010	966	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0011	966	1	0	0	1	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5V1_chr6_29348749_29373865	0/0	c0012	966	1	1	0	0	0	0	copy fasta	OR5V1	chr6	29348749	29373865
OR5W2_chr11_55908650_55919582	0/0	c0001	933	225	52	34	102	10	27	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0002	933	96	24	23	36	3	10	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/1	c0003	933	42	6	5	26	0	4	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0004	933	37	8	4	18	3	4	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0005	933	21	0	0	20	0	1	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0006	933	5	1	2	0	2	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0007	933	5	0	0	5	0	0	copy fasta	OR5W2	chr11	55908650	55919582