JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5W2_chr11_55908650_55919582	1/0	c0008	933	2	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0009	933	1	0	0	1	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0010	933	1	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR5W2_chr11_55908650_55919582	0/0	c0011	933	1	1	0	0	0	0	copy fasta	OR5W2	chr11	55908650	55919582
OR6A2_chr11_6786736_6804689	0/0	c0001	984	167	15	20	105	7	20	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0002	984	152	22	22	88	4	16	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	1/1	c0003	984	121	43	36	33	3	4	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0004	984	6	0	3	0	0	3	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0005	984	3	3	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0006	984	3	3	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0007	984	2	2	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0008	984	2	2	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0009	984	1	0	0	0	0	1	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0010	984	1	0	1	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0011	984	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6A2_chr11_6786736_6804689	0/0	c0012	984	1	1	0	0	0	0	copy fasta	OR6A2	chr11	6786736	6804689
OR6B1_chr7_143995320_144013793	1/0	c0001	936	196	35	41	74	11	34	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/1	c0002	936	103	23	7	62	4	6	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	c0003	936	86	6	20	53	1	6	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	c0004	936	13	0	9	4	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	c0005	936	11	11	0	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	c0006	936	6	5	1	0	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B1_chr7_143995320_144013793	0/0	c0007	936	1	0	0	1	0	0	copy fasta	OR6B1	chr7	143995320	144013793
OR6B2_chr2_240024491_240035429	1/0	c0001	939	280	54	55	128	9	33	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/1	c0002	939	124	4	23	79	8	9	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0003	939	14	14	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0004	939	10	0	0	6	0	4	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0005	939	8	8	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0006	939	5	4	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0007	939	4	4	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0008	939	2	0	0	2	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0010	939	1	0	0	0	0	1	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0016	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0017	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0018	939	1	0	0	0	1	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0019	939	1	0	0	0	0	1	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0020	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0021	939	1	0	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0022	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0023	939	1	0	1	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0024	939	1	1	0	0	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B2_chr2_240024491_240035429	0/0	c0025	797	1	0	0	1	0	0	copy fasta	OR6B2	chr2	240024491	240035429
OR6B3_chr2_240039571_240058521	0/0	c0001	996	148	21	18	93	7	9	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	1/1	c0002	996	138	20	37	57	6	16	copy fasta	OR6B3	chr2	240039571	240058521