JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6B3_chr2_240039571_240058521	0/0	c0003	996	54	18	6	24	0	6	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0004	996	47	11	4	19	4	9	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0005	996	32	15	11	0	0	6	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0006	996	3	3	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0007	996	2	2	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0008	996	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0009	996	2	2	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0010	996	2	0	0	2	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0011	996	2	0	0	1	0	1	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0012	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0013	996	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0014	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0015	996	1	0	0	0	0	1	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0016	996	1	0	0	0	1	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0017	996	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0018	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0019	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0020	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0021	996	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0022	996	1	1	0	0	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6B3_chr2_240039571_240058521	0/0	c0023	996	1	0	0	1	0	0	copy fasta	OR6B3	chr2	240039571	240058521
OR6C1_chr12_55309343_55327364	0/0	c0001	939	176	36	24	99	5	12	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0002	940	161	21	32	87	7	14	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	1/1	c0003	939	82	10	15	40	2	13	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0004	939	37	24	6	0	3	4	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0005	940	7	2	3	1	0	1	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0007	940	2	0	0	2	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0009	940	1	1	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0010	940	1	1	0	0	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0011	939	1	0	0	0	1	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C1_chr12_55309343_55327364	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR6C1	chr12	55309343	55327364
OR6C2_chr12_55439076_55458347	1/1	c0001	939	364	56	72	182	12	40	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0002	939	30	17	6	0	2	5	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0003	939	22	0	0	22	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0004	939	16	16	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0005	939	8	6	0	0	0	2	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0006	939	3	1	2	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0007	939	3	3	0	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0008	939	2	1	1	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0009	939	1	0	0	0	1	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0010	939	1	0	0	0	0	1	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0011	939	1	0	0	0	1	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C2_chr12_55439076_55458347	0/0	c0014	939	1	0	1	0	0	0	copy fasta	OR6C2	chr12	55439076	55458347
OR6C3_chr12_55325746_55337636	1/1	c0001	936	375	60	71	191	13	38	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0002	936	37	25	6	0	3	3	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0003	936	15	0	0	14	0	1	copy fasta	OR6C3	chr12	55325746	55337636