JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6C3_chr12_55325746_55337636	0/0	c0004	936	13	8	3	0	0	2	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0005	936	3	3	0	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0006	936	2	2	0	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0007	936	1	0	1	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0008	936	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0009	936	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C3_chr12_55325746_55337636	0/0	c0011	936	1	0	1	0	0	0	copy fasta	OR6C3	chr12	55325746	55337636
OR6C4_chr12_55544602_55560832	0/1	c0001	930	360	64	73	166	14	42	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0002	930	33	14	1	18	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0003	926	11	11	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0004	926	5	3	2	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	1/0	c0005	930	2	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0006	930	2	0	0	2	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0007	926	2	2	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0008	930	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0009	930	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0011	930	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C4_chr12_55544602_55560832	0/0	c0014	926	1	1	0	0	0	0	copy fasta	OR6C4	chr12	55544602	55560832
OR6C65_chr12_55395529_55406467	0/1	c0001	939	325	35	62	178	12	37	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	1/0	c0002	939	87	50	9	16	4	7	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0003	939	5	0	0	5	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0004	939	4	3	1	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0005	939	3	3	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0006	939	2	0	2	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0007	939	2	0	0	0	0	2	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C65_chr12_55395529_55406467	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR6C65	chr12	55395529	55406467
OR6C68_chr12_55487378_55498316	0/0	c0001	939	163	23	23	103	5	9	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0002	939	137	4	40	72	6	15	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	1/1	c0003	939	127	44	21	31	7	22	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0004	939	26	23	3	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0005	939	12	0	0	11	0	1	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0006	939	4	4	0	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0007	939	2	2	0	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0009	939	1	0	0	0	0	1	copy fasta	OR6C68	chr12	55487378	55498316
OR6C68_chr12_55487378_55498316	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR6C68	chr12	55487378	55498316
OR6C6_chr12_55288988_55301569	0/1	c0001	945	346	60	58	185	15	27	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	1/0	c0002	945	74	5	16	34	3	15	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0003	945	16	14	2	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0004	945	14	2	6	4	0	2	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0005	945	13	0	0	13	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0006	945	11	10	1	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569