JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6C6_chr12_55288988_55301569	0/0	c0008	945	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C6_chr12_55288988_55301569	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR6C6	chr12	55288988	55301569
OR6C70_chr12_55464200_55475138	0/0	c0001	939	164	64	26	55	5	14	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0002	939	130	18	18	81	5	8	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	1/1	c0003	939	65	3	12	31	3	14	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0004	939	46	2	22	11	5	6	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0005	939	16	0	0	15	0	1	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0006	939	5	0	0	5	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0007	939	3	3	0	0	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0008	939	3	0	0	3	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0009	939	2	0	0	2	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0010	939	2	2	0	0	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR6C70	chr12	55464200	55475138
OR6C70_chr12_55464200_55475138	0/0	c0016	939	1	0	0	0	0	1	copy fasta	OR6C70	chr12	55464200	55475138
OR6C74_chr12_55239609_55261625	1/0	c0001	939	233	57	44	93	11	27	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0002	939	32	7	5	16	0	4	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/1	c0003	939	30	3	13	4	3	6	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0004	939	20	18	2	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0005	939	7	2	2	1	0	2	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0006	939	6	0	0	6	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0007	939	5	0	0	5	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0008	939	5	0	0	5	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0009	939	1	0	0	0	0	1	copy fasta	OR6C74	chr12	55239609	55261625
OR6C74_chr12_55239609_55261625	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR6C74	chr12	55239609	55261625
OR6C75_chr12_55357975_55374279	1/1	c0001	939	423	93	74	194	18	42	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0002	938	16	0	0	15	0	1	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0003	939	3	0	0	3	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0004	939	3	3	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0005	939	2	0	2	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0006	939	2	0	0	2	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0007	939	1	0	0	0	0	1	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C75_chr12_55357975_55374279	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR6C75	chr12	55357975	55374279
OR6C76_chr12_55421254_55432192	0/0	c0001	939	312	49	58	167	11	27	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/1	c0002	938	65	5	13	29	3	14	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	1/0	c0003	939	42	27	6	0	3	5	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0004	939	6	4	0	0	0	2	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0005	939	3	3	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0007	939	2	0	2	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192