JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6C76_chr12_55421254_55432192	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0010	939	1	0	0	0	1	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6C76_chr12_55421254_55432192	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR6C76	chr12	55421254	55432192
OR6F1_chr1_247706436_247721646	1/1	c0001	927	190	22	36	101	8	21	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0002	927	62	3	3	47	0	9	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0003	927	31	25	5	0	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0004	927	28	9	4	14	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0005	927	15	1	8	0	3	3	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0006	927	8	8	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0007	927	7	3	3	0	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0008	927	6	6	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0009	927	6	4	2	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0010	927	5	0	0	5	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0011	927	3	2	1	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0012	927	3	0	0	0	2	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0013	927	3	0	2	0	1	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0014	927	2	0	0	1	0	1	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0015	927	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0016	927	1	0	0	1	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0017	927	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0018	927	1	1	0	0	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6F1_chr1_247706436_247721646	0/0	c0019	927	1	0	0	1	0	0	copy fasta	OR6F1	chr1	247706436	247721646
OR6J1_chr14_22625929_22649352	0/1	c0001	1044	150	4	31	84	5	25	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	1/0	c0002	1044	134	50	29	39	4	11	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0003	1044	45	20	8	12	1	4	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0004	1044	7	7	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0005	1044	4	1	1	0	2	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0006	1044	4	1	0	0	1	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0007	1044	4	4	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0008	1044	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0009	1044	2	0	0	0	0	2	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0010	1044	2	0	1	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0011	1044	1	0	1	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0012	1044	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0013	1044	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0014	1044	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0015	1044	1	0	0	0	1	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0016	1044	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0017	1044	1	1	0	0	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6J1_chr14_22625929_22649352	0/0	c0018	1044	1	0	0	1	0	0	copy fasta	OR6J1	chr14	22625929	22649352
OR6K2_chr1_158694678_158705652	1/1	c0001	975	381	39	84	194	16	46	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0002	975	17	16	1	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0003	975	15	0	0	15	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0004	975	11	11	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0005	975	10	9	1	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0006	975	7	7	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0007	975	7	0	0	7	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0008	973	5	5	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652