JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6K2_chr1_158694678_158705652	0/0	c0009	975	3	3	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0010	975	2	2	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0011	975	1	0	0	1	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0013	975	1	0	0	1	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K2_chr1_158694678_158705652	0/0	c0014	975	1	1	0	0	0	0	copy fasta	OR6K2	chr1	158694678	158705652
OR6K3_chr1_158711327_158725720	1/1	c0001	948	182	24	36	90	3	27	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0002	948	127	6	32	79	5	5	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0003	948	70	5	9	35	8	13	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0004	948	18	18	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0005	948	12	11	1	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0006	948	11	11	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0007	948	8	8	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0008	948	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0009	948	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0010	948	2	2	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0011	948	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0014	948	1	0	0	1	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR6K3	chr1	158711327	158725720
OR6K3_chr1_158711327_158725720	0/0	c0016	948	1	0	0	0	0	1	copy fasta	OR6K3	chr1	158711327	158725720
OR6K6_chr1_158749720_158760891	1/1	c0001	960	359	41	69	191	12	44	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0002	960	50	4	12	28	4	2	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0003	960	13	12	1	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0004	960	12	12	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0005	960	10	10	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0006	960	10	10	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0007	960	6	6	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0008	960	1	1	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0009	960	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0010	960	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0011	960	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0012	960	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0013	960	1	1	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0014	960	1	1	0	0	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6K6_chr1_158749720_158760891	0/0	c0015	960	1	0	0	1	0	0	copy fasta	OR6K6	chr1	158749720	158760891
OR6M1_chr11_123800408_123811349	1/0	c0001	942	203	45	26	105	6	20	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0002	942	104	5	24	62	4	9	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0003	942	91	25	19	40	3	4	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/1	c0004	942	52	6	11	21	3	10	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0005	942	8	6	2	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0006	942	5	0	2	0	0	3	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0007	942	2	2	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0008	942	1	0	0	1	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0009	942	1	0	0	1	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0011	942	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0012	942	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6M1_chr11_123800408_123811349	0/0	c0013	942	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349