JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6M1_chr11_123800408_123811349	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR6M1	chr11	123800408	123811349
OR6N1_chr1_158759236_158777195	0/0	c0001	939	134	2	22	94	4	12	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0002	939	122	37	24	50	2	9	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/1	c0003	939	115	21	29	55	6	3	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	1/0	c0004	939	55	3	3	33	0	15	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0005	939	19	17	2	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0006	939	6	5	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0007	939	6	6	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0008	939	3	3	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0009	939	2	0	0	2	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0010	939	2	0	0	0	0	2	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0011	939	1	0	0	0	1	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0015	939	1	0	0	0	1	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0016	939	1	0	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0017	939	1	0	0	0	0	1	copy fasta	OR6N1	chr1	158759236	158777195
OR6N1_chr1_158759236_158777195	0/0	c0018	939	1	0	0	1	0	0	copy fasta	OR6N1	chr1	158759236	158777195
OR6N2_chr1_158769222_158786204	1/1	c0001	954	341	63	79	157	13	27	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0002	954	85	20	2	48	0	15	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0003	954	9	0	0	9	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0004	954	7	1	5	0	1	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0005	954	4	4	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0006	954	4	4	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0007	954	2	2	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0008	954	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0009	954	1	1	0	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0010	954	1	0	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0011	954	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0012	954	1	0	0	1	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6N2_chr1_158769222_158786204	0/0	c0013	954	1	0	1	0	0	0	copy fasta	OR6N2	chr1	158769222	158786204
OR6P1_chr1_158555606_158575580	0/0	c0001	954	205	39	31	109	8	18	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	1/1	c0002	954	177	33	40	79	5	18	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0003	954	7	0	0	7	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0004	954	6	6	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0005	954	5	5	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0006	954	5	0	2	0	3	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0007	954	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0008	954	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0009	954	2	2	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0010	954	2	2	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0011	954	2	2	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0012	954	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0013	954	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0014	954	1	0	0	0	0	1	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0015	954	1	0	1	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0016	954	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0017	954	1	0	0	0	0	1	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	c0018	954	1	1	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580