JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6Q1_chr11_58025953_58036906	0/1	c0001	954	165	24	23	96	5	16	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0002	954	79	27	14	37	1	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0003	954	62	4	9	35	3	11	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	1/0	c0004	954	60	19	20	11	2	7	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0005	953	28	10	6	6	3	3	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0006	954	9	0	0	9	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0007	954	4	0	0	4	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0008	954	3	3	0	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0009	954	1	0	0	1	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0010	954	1	1	0	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0011	954	1	0	0	1	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0012	954	1	0	1	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0013	954	1	0	0	0	0	1	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	c0014	954	1	0	1	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6S1_chr14_20635696_20646691	0/0	c0001	996	229	28	30	139	7	25	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/1	c0002	996	143	38	34	57	4	9	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0003	996	48	8	11	18	3	8	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0004	996	14	12	2	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0005	996	11	0	0	11	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	1/0	c0006	996	4	3	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0007	996	3	0	1	0	2	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0008	996	3	2	1	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0009	996	3	2	1	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0010	996	2	0	2	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0011	996	2	0	0	0	0	2	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0012	996	2	0	0	0	0	2	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0013	996	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0014	996	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0015	996	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0016	996	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0017	996	1	0	0	1	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	c0018	996	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6T1_chr11_123937867_123948838	1/0	c0001	972	260	71	42	106	12	28	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/1	c0002	972	113	6	18	72	3	13	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0003	972	39	7	8	24	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0004	972	7	0	0	7	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0005	972	3	0	0	3	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0006	972	2	0	1	0	0	1	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0007	972	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0008	972	2	0	0	0	1	1	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0009	972	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0010	972	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0011	972	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0012	972	2	1	1	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0013	972	1	0	1	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0014	972	1	1	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0015	972	1	0	1	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0016	972	1	1	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0017	972	1	0	0	0	0	1	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	c0018	972	1	1	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838