JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR7A10_chr19_14835466_14853922	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0014	930	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0015	930	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A17_chr19_14873203_14891132	0/1	c0001	930	148	33	22	84	3	5	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0002	930	140	8	22	96	3	11	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0003	930	71	20	16	17	3	15	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	1/0	c0004	930	45	15	13	2	7	7	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0005	930	19	13	3	1	0	2	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0006	930	5	0	3	2	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0007	930	5	3	1	1	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0008	930	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0009	930	3	0	0	3	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0010	930	2	1	1	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0011	930	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0012	930	1	0	1	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	c0013	930	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A5_chr19_14821241_14840185	0/0	c0001	960	245	59	33	131	3	19	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	1/1	c0002	960	187	25	46	82	12	20	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0003	960	18	0	2	8	1	7	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0004	960	6	6	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0005	960	6	6	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0006	960	3	3	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0007	960	2	0	0	0	0	2	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0008	960	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0009	960	1	0	0	0	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0010	960	1	1	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0011	960	1	0	0	0	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	c0012	960	1	0	1	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7C1_chr19_14793515_14840185	0/0	c0001	963	244	36	41	138	6	23	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/1	c0002	963	53	9	9	26	3	5	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0003	963	50	19	18	4	2	7	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	1/0	c0004	963	13	0	6	0	4	2	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0005	963	10	9	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0006	960	8	7	1	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0007	963	7	0	0	2	0	5	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0008	963	7	7	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0009	963	6	0	0	6	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0010	963	3	3	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0011	963	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0012	963	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0013	963	1	0	0	0	1	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0014	963	1	0	0	0	0	1	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0015	963	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0016	963	1	1	0	0	0	0	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	c0017	963	1	0	0	0	0	1	copy fasta	OR7C1	chr19	14793515	14840185
OR7C2_chr19_14936489_14947448	0/1	c0001	963	408	80	71	195	15	46	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0002	963	10	8	1	0	1	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0003	963	4	0	0	4	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0004	963	3	0	3	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448