JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR7C2_chr19_14936489_14947448	1/0	c0005	960	3	0	2	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0006	963	3	3	0	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0007	963	2	2	0	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0008	963	1	0	0	1	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0009	963	1	0	1	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7C2_chr19_14936489_14947448	0/0	c0010	963	1	1	0	0	0	0	copy fasta	OR7C2	chr19	14936489	14947448
OR7D2_chr19_9173979_9193818	1/1	c0001	939	249	63	50	98	10	26	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0002	939	54	5	19	12	3	15	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0003	939	34	1	4	27	2	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0004	939	21	11	0	10	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0005	939	15	0	0	15	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0006	939	5	5	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0007	939	5	4	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0008	939	4	4	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0009	939	3	0	0	3	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0010	939	2	2	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0011	921	1	0	0	0	0	1	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0013	939	1	0	0	0	1	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0014	939	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0015	939	1	0	0	1	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D2_chr19_9173979_9193818	0/0	c0016	939	1	0	1	0	0	0	copy fasta	OR7D2	chr19	9173979	9193818
OR7D4_chr19_9205276_9224589	1/1	c0001	939	253	42	48	130	6	25	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0002	939	78	4	11	52	7	4	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0003	939	66	31	11	7	3	14	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0004	939	10	8	2	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0005	939	9	0	0	9	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0006	939	6	6	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0007	939	3	3	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0009	939	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0011	939	1	0	0	0	0	1	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0013	939	1	0	1	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7D4_chr19_9205276_9224589	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR7D4	chr19	9205276	9224589
OR7E24_chr19_9245930_9257625	1/1	c0001	1020	202	11	53	103	9	24	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0002	1020	163	71	26	53	5	8	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0003	1020	43	7	3	15	3	15	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0004	1020	39	0	2	36	0	1	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0005	1020	14	0	0	13	1	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0006	1020	5	5	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0007	1020	3	0	0	3	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0008	1020	2	2	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0009	1020	1	0	0	1	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0010	1020	1	0	0	1	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0011	1020	1	1	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0012	1020	1	0	0	1	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7E24_chr19_9245930_9257625	0/0	c0013	1020	1	1	0	0	0	0	copy fasta	OR7E24	chr19	9245930	9257625
OR7G1_chr19_9109828_9120763	1/1	c0001	936	210	8	55	115	13	17	copy fasta	OR7G1	chr19	9109828	9120763