JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR7G1_chr19_9109828_9120763	0/0	c0002	936	136	51	7	57	1	20	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0003	936	24	13	6	0	1	4	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0004	936	22	9	5	4	1	3	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0005	936	4	3	0	1	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0006	936	3	3	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0007	936	3	3	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0008	936	2	0	0	2	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0009	936	2	2	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G1_chr19_9109828_9120763	0/0	c0013	936	1	0	1	0	0	0	copy fasta	OR7G1	chr19	9109828	9120763
OR7G2_chr19_9095407_9112475	0/0	c0001	975	244	66	47	91	10	30	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0002	975	152	7	25	101	5	14	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0003	975	20	3	9	3	1	4	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0004	975	15	14	1	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0005	975	8	8	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0006	975	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0007	975	1	0	0	1	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G2_chr19_9095407_9112475	0/0	c0008	975	1	1	0	0	0	0	copy fasta	OR7G2	chr19	9095407	9112475
OR7G3_chr19_9121012_9131950	1/1	c0001	939	212	18	56	100	14	22	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0002	944	132	47	14	48	2	21	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0003	943	26	12	7	3	1	3	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0004	944	10	1	0	9	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0005	939	5	5	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0006	944	5	5	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0007	944	3	0	0	3	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0011	939	1	0	0	0	1	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0014	944	1	1	0	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR7G3_chr19_9121012_9131950	0/0	c0015	939	1	0	1	0	0	0	copy fasta	OR7G3	chr19	9121012	9131950
OR8A1_chr11_124564997_124576374	0/0	c0001	930	257	60	28	145	6	18	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0002	930	102	5	14	61	5	17	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	1/1	c0003	930	66	7	21	16	7	13	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0004	930	8	7	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0005	930	8	7	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0006	930	3	3	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0007	930	3	3	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0008	930	2	2	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0009	930	1	0	1	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8A1_chr11_124564997_124576374	0/0	c0011	930	1	1	0	0	0	0	copy fasta	OR8A1	chr11	124564997	124576374
OR8B12_chr11_124537722_124548654	1/1	c0001	933	397	62	78	198	14	43	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0002	933	32	16	2	9	0	5	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0003	933	10	9	1	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0004	930	7	7	0	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654