JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8B12_chr11_124537722_124548654	0/0	c0005	933	6	5	1	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0006	933	2	0	0	2	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0007	933	1	1	0	0	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B12_chr11_124537722_124548654	0/0	c0008	933	1	0	0	1	0	0	copy fasta	OR8B12	chr11	124537722	124548654
OR8B2_chr11_124377394_124389499	1/1	c0001	942	258	21	47	153	12	23	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0002	942	127	44	19	47	2	15	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0003	942	21	7	4	9	0	1	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0004	942	18	14	2	2	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0005	942	6	5	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0007	942	3	0	1	0	0	2	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0008	942	1	0	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0009	942	1	0	1	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0011	942	1	1	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0012	942	1	1	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0013	894	1	0	0	0	0	1	copy fasta	OR8B2	chr11	124377394	124389499
OR8B2_chr11_124377394_124389499	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR8B2	chr11	124377394	124389499
OR8B3_chr11_124390534_124404024	0/1	c0001	942	209	16	27	134	10	21	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0002	942	121	35	19	46	2	19	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	1/0	c0003	942	53	7	19	24	1	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0004	942	17	2	4	10	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0005	943	10	0	5	0	1	4	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0006	942	7	6	1	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0007	942	6	6	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0008	942	6	6	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0009	942	5	4	1	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0010	942	3	3	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0011	942	3	0	0	3	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0012	942	2	2	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0013	942	2	2	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0015	942	1	0	0	1	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0016	942	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0017	942	1	0	0	0	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0018	942	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0019	942	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0020	943	1	0	0	0	0	1	copy fasta	OR8B3	chr11	124390534	124404024
OR8B3_chr11_124390534_124404024	0/0	c0021	942	1	1	0	0	0	0	copy fasta	OR8B3	chr11	124390534	124404024
OR8B4_chr11_124418942_124429871	0/0	c0001	930	174	27	19	114	3	11	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	1/1	c0002	930	137	22	32	51	10	20	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0003	930	70	26	12	30	1	1	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0004	930	22	7	7	2	2	4	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0005	930	11	10	1	0	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0006	930	4	0	0	4	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0007	930	3	0	1	0	0	2	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0008	930	2	0	0	2	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0009	930	1	0	0	0	0	1	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0010	930	1	0	0	1	0	0	copy fasta	OR8B4	chr11	124418942	124429871
OR8B4_chr11_124418942_124429871	0/0	c0011	930	1	0	0	0	0	1	copy fasta	OR8B4	chr11	124418942	124429871