JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8B8_chr11_124432445_124450696	1/1	c0001	936	263	72	50	95	12	32	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0002	936	125	1	23	85	3	13	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0003	936	24	22	2	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0004	936	3	0	0	3	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0005	936	2	0	1	0	1	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0006	936	1	0	0	0	0	1	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0007	936	1	0	0	1	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0008	936	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8B8_chr11_124432445_124450696	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR8B8	chr11	124432445	124450696
OR8D1_chr11_124297831_124318949	1/0	c0001	927	241	47	44	112	6	31	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/1	c0002	927	106	8	18	66	5	8	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0003	927	50	32	7	11	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0004	927	8	0	2	0	5	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0005	927	6	0	4	0	0	2	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0006	927	6	6	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0007	927	3	3	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0008	927	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0009	927	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0010	927	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0011	927	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0012	927	1	0	0	0	0	1	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0013	927	1	0	1	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0014	927	1	0	0	1	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D1_chr11_124297831_124318949	0/0	c0015	927	1	1	0	0	0	0	copy fasta	OR8D1	chr11	124297831	124318949
OR8D2_chr11_124314262_124325197	1/1	c0001	936	271	45	53	131	11	29	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0002	936	133	35	20	61	3	14	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0003	936	7	7	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0004	936	3	3	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0005	936	2	2	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0006	936	2	0	0	2	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0007	936	2	0	0	2	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0008	936	2	2	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0009	936	1	0	0	0	0	1	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0011	936	1	0	1	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D2_chr11_124314262_124325197	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR8D2	chr11	124314262	124325197
OR8D4_chr11_123897167_123914229	0/1	c0001	945	116	7	25	64	3	16	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0002	945	96	11	27	53	2	3	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0003	945	84	21	8	39	4	12	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	1/0	c0004	945	80	11	13	40	4	11	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0005	945	30	16	3	11	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0006	945	12	3	5	0	1	3	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0007	945	9	9	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0008	946	7	6	1	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0009	945	6	0	0	6	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0010	945	2	0	0	2	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0011	945	2	2	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0012	946	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0013	945	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229