JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8D4_chr11_123897167_123914229	0/0	c0014	945	1	0	0	0	0	1	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0015	945	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0016	945	1	0	0	1	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8D4_chr11_123897167_123914229	0/0	c0017	945	1	1	0	0	0	0	copy fasta	OR8D4	chr11	123897167	123914229
OR8G1_chr11_124236095_124259364	1/1	c0001	936	180	7	38	110	10	13	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0002	863	120	42	16	48	3	11	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0003	863	88	17	16	39	2	14	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0004	936	15	9	0	6	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0005	936	8	8	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0006	862	7	7	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0007	936	3	0	0	0	3	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0008	936	3	3	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0009	936	2	2	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0010	863	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0012	863	1	1	0	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G1_chr11_124236095_124259364	0/0	c0013	936	1	0	1	0	0	0	copy fasta	OR8G1	chr11	124236095	124259364
OR8G5_chr11_124251376_124271224	1/0	c0001	936	171	47	34	66	5	18	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/1	c0002	936	128	15	17	82	3	10	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0003	936	46	19	1	21	0	5	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0004	936	45	1	18	23	1	2	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0005	936	20	3	5	11	0	1	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0006	936	5	5	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0007	936	5	5	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0008	936	5	0	1	1	3	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0009	936	3	0	0	3	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0011	936	1	1	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8G5_chr11_124251376_124271224	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR8G5	chr11	124251376	124271224
OR8H1_chr11_56283462_56297254	0/1	c0001	936	218	63	36	93	6	19	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0002	936	173	23	29	98	3	20	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0003	936	45	1	10	24	5	5	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0004	936	8	4	2	0	2	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0005	936	2	2	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0006	936	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0007	936	1	0	1	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0008	936	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0009	936	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H1_chr11_56283462_56297254	0/0	c0014	936	1	0	0	1	0	0	copy fasta	OR8H1	chr11	56283462	56297254
OR8H2_chr11_56098687_56112658	0/0	c0001	939	331	49	57	180	12	33	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/1	c0002	939	40	6	4	24	0	5	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0003	939	34	5	3	19	3	4	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0004	939	13	13	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0005	939	5	1	2	0	2	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0006	939	5	5	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658