JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8H2_chr11_56098687_56112658	1/0	c0007	939	3	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0008	939	3	2	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0009	939	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0010	939	3	3	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0011	939	2	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0012	939	2	2	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0014	939	1	0	0	0	1	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0015	926	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0017	939	1	0	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0018	939	1	1	0	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0019	939	1	0	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H2_chr11_56098687_56112658	0/0	c0020	939	1	0	1	0	0	0	copy fasta	OR8H2	chr11	56098687	56112658
OR8H3_chr11_56117373_56128311	0/0	c0001	939	284	50	52	142	11	29	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0002	939	37	2	8	22	2	3	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0003	939	37	6	4	22	0	5	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0004	939	13	12	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0005	939	11	10	1	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0006	939	5	1	2	0	2	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0007	939	4	3	1	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0008	939	4	4	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0009	939	4	1	2	0	0	1	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0010	939	3	0	2	0	1	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	1/0	c0011	939	3	2	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0012	939	3	3	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0013	929	1	1	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0015	939	1	0	0	0	0	1	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0017	939	1	0	0	0	0	1	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0018	939	1	0	0	1	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8H3_chr11_56117373_56128311	0/0	c0019	939	1	1	0	0	0	0	copy fasta	OR8H3	chr11	56117373	56128311
OR8I2_chr11_56088308_56099240	1/1	c0001	933	428	80	71	213	16	46	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0002	933	11	10	1	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0003	931	5	1	2	0	2	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0004	931	3	3	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0005	933	2	0	2	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0006	933	2	0	2	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0007	933	1	0	0	1	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0008	933	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0009	933	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0010	933	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0011	933	1	0	0	1	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0012	933	1	1	0	0	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8I2_chr11_56088308_56099240	0/0	c0013	933	1	0	0	1	0	0	copy fasta	OR8I2	chr11	56088308	56099240
OR8J1_chr11_56349291_56366511	0/0	c0001	951	264	47	44	135	11	27	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0002	951	83	17	17	36	3	10	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0003	951	39	7	4	22	0	6	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0004	951	13	12	1	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511