JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8J1_chr11_56349291_56366511	0/0	c0005	951	5	1	2	0	2	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0006	951	3	0	2	0	0	1	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0007	951	3	3	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0008	951	2	0	0	2	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/1	c0009	951	1	0	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0010	951	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0011	951	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0014	951	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J1_chr11_56349291_56366511	0/0	c0015	951	1	1	0	0	0	0	copy fasta	OR8J1	chr11	56349291	56366511
OR8J3_chr11_56129721_56145201	1/0	c0001	948	342	64	62	164	14	37	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/1	c0002	948	40	5	4	25	0	5	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0003	948	12	7	3	0	2	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0004	948	6	6	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0005	948	5	5	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0006	948	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0007	948	2	2	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0009	948	1	0	0	1	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8J3_chr11_56129721_56145201	0/0	c0010	946	1	0	1	0	0	0	copy fasta	OR8J3	chr11	56129721	56145201
OR8K1_chr11_56341039_56351998	0/0	c0001	960	227	28	44	122	8	25	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/1	c0002	960	93	31	9	39	3	10	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0003	960	85	17	18	39	3	8	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0004	960	10	10	0	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0005	960	8	4	2	0	2	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0006	960	5	0	0	5	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0007	960	3	3	0	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0008	960	1	1	0	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0009	960	1	1	0	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0010	960	1	1	0	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0011	960	1	0	0	1	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0012	960	1	0	1	0	0	0	copy fasta	OR8K1	chr11	56341039	56351998
OR8K1_chr11_56341039_56351998	0/0	c0013	960	1	0	0	0	0	1	copy fasta	OR8K1	chr11	56341039	56351998
OR8K3_chr11_56310144_56325639	0/1	c0001	939	301	65	53	145	9	28	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0002	939	80	15	18	34	3	10	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0003	939	10	7	1	0	2	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0004	939	5	5	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0005	939	5	0	0	5	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0006	939	4	1	2	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0011	939	1	0	0	0	0	1	copy fasta	OR8K3	chr11	56310144	56325639
OR8K3_chr11_56310144_56325639	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR8K3	chr11	56310144	56325639
OR8K5_chr11_56154394_56165317	1/1	c0001	924	381	74	63	180	16	46	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0002	924	29	0	6	23	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0003	924	8	4	2	0	2	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0004	924	6	5	1	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317