JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8K5_chr11_56154394_56165317	0/0	c0005	924	5	5	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0006	924	2	2	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0007	924	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0008	924	1	1	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0009	924	1	1	0	0	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0010	924	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8K5_chr11_56154394_56165317	0/0	c0011	924	1	0	0	1	0	0	copy fasta	OR8K5	chr11	56154394	56165317
OR8S1_chr12_48520632_48531570	0/0	c0001	939	167	34	31	91	2	9	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0002	939	106	33	15	43	4	11	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/1	c0003	939	85	1	19	46	7	11	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	1/0	c0004	939	34	14	6	7	3	3	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0005	939	32	2	11	12	2	5	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0006	939	10	0	0	10	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0007	939	5	3	2	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0009	939	1	0	0	0	0	1	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8S1_chr12_48520632_48531570	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR8S1	chr12	48520632	48531570
OR8U1_chr11_56370624_56381553	0/0	c0001	8535	127	21	20	65	5	16	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	1/1	c0002	930	41	8	2	23	0	6	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0003	8535	41	2	8	24	1	6	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0004	8540	23	0	2	15	3	3	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0005	8535	21	11	8	0	1	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0006	8535	10	0	0	10	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0007	8534	5	1	2	0	2	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0008	8534	5	5	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0009	8540	5	4	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0010	8536	5	5	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0011	8534	4	4	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0012	8540	3	3	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0013	8535	3	0	0	3	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0014	8535	3	0	2	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0015	8536	3	3	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0016	930	2	0	2	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0017	8534	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0018	8535	2	1	0	0	1	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0019	8531	2	0	0	0	0	2	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0020	8536	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0021	8540	2	0	1	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0022	8540	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0023	8540	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0024	8535	2	0	0	2	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0025	8535	2	0	0	2	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0026	8537	2	0	0	2	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0027	8534	2	2	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0028	8534	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0029	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0030	8531	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0031	8535	1	0	0	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0032	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553