JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8U1_chr11_56370624_56381553	0/0	c0033	8534	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0034	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0035	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0036	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0037	8536	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0038	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0039	8540	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0040	8540	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0041	8540	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0042	8536	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0043	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0044	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0045	8535	1	0	0	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0046	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0047	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0048	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0049	8535	1	0	0	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0050	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0051	8531	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0052	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0053	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0054	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0055	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0056	8535	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0057	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0058	8535	1	0	0	0	0	1	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0059	8535	1	0	0	0	1	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0060	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0061	8534	1	0	0	1	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0062	8535	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0063	8528	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0064	8536	1	0	1	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0065	8535	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0066	8532	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0067	8532	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U1_chr11_56370624_56381553	0/0	c0068	8534	1	1	0	0	0	0	copy fasta	OR8U1	chr11	56370624	56381553
OR8U3_chr11_56412258_56423232	0/0	c0001	975	230	24	43	128	10	25	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0002	975	99	32	19	37	3	8	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	1/1	c0003	975	45	8	4	25	0	6	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0004	975	41	12	5	16	3	5	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0005	975	5	5	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0006	975	5	1	2	0	2	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0007	975	3	0	0	3	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0008	975	3	3	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0009	975	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0010	975	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0011	975	2	2	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0013	975	1	1	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0014	975	1	0	1	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232