JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR8U3_chr11_56412258_56423232	0/0	c0015	975	1	1	0	0	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR8U3_chr11_56412258_56423232	0/0	c0016	975	1	0	0	1	0	0	copy fasta	OR8U3	chr11	56412258	56423232
OR9A2_chr7_143021200_143032132	0/1	c0001	933	281	78	40	112	14	36	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0002	933	26	11	4	9	0	2	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0003	933	8	7	1	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0004	933	1	1	0	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0005	933	1	1	0	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0006	933	1	0	0	0	0	1	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0007	933	1	0	0	0	0	1	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0008	933	1	0	0	1	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A2_chr7_143021200_143032132	0/0	c0009	933	1	0	1	0	0	0	copy fasta	OR9A2	chr7	143021200	143032132
OR9A4_chr7_141911399_141925625	1/1	c0001	945	413	82	73	191	16	49	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0002	945	14	0	5	9	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0003	945	9	8	1	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0004	945	2	2	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0005	945	2	2	0	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0006	945	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0008	945	1	0	1	0	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0010	945	1	0	0	0	0	1	copy fasta	OR9A4	chr7	141911399	141925625
OR9A4_chr7_141911399_141925625	0/0	c0011	945	1	0	0	1	0	0	copy fasta	OR9A4	chr7	141911399	141925625
OR9G1_chr11_56694095_56708884	0/0	c0001	918	254	24	55	138	12	25	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/1	c0002	918	53	18	4	24	0	6	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0003	918	48	25	1	19	0	3	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0004	918	30	14	9	4	2	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0005	918	10	10	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0006	918	9	1	3	0	4	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	1/0	c0007	918	3	2	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0008	918	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0009	918	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0010	918	1	0	1	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0011	918	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0012	918	1	0	0	0	0	1	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0013	918	1	0	0	1	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G1_chr11_56694095_56708884	0/0	c0014	918	1	1	0	0	0	0	copy fasta	OR9G1	chr11	56694095	56708884
OR9G4_chr11_56736223_56753697	0/0	c0001	939	321	67	53	165	11	25	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/1	c0002	939	42	10	4	22	1	4	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0003	939	32	1	4	21	1	5	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0004	939	31	10	11	3	5	2	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0005	939	5	5	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0006	939	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0007	939	1	0	1	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9G4_chr11_56736223_56753697	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR9G4	chr11	56736223	56753697
OR9I1_chr11_58111742_58130530	1/1	c0001	945	384	82	76	168	16	40	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0002	945	19	0	0	19	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0003	945	2	0	0	2	0	0	copy fasta	OR9I1	chr11	58111742	58130530