JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR9I1_chr11_58111742_58130530	0/0	c0004	945	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0005	945	1	0	0	1	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0006	945	1	0	0	0	0	1	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0007	945	1	1	0	0	0	0	copy fasta	OR9I1	chr11	58111742	58130530
OR9I1_chr11_58111742_58130530	0/0	c0008	945	1	0	0	0	0	1	copy fasta	OR9I1	chr11	58111742	58130530
OR9K2_chr12_55121406_55137750	1/0	c0001	942	250	47	61	108	9	24	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/1	c0002	942	109	43	21	24	5	15	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0003	942	4	0	0	3	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0004	942	2	0	0	0	2	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0005	942	1	0	0	0	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0006	942	1	0	0	0	0	1	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0007	942	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9K2_chr12_55121406_55137750	0/0	c0009	942	1	0	0	1	0	0	copy fasta	OR9K2	chr12	55121406	55137750
OR9Q1_chr11_58018881_58186616	1/1	c0001	933	215	64	46	80	7	16	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0002	933	98	13	18	50	2	15	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0003	933	5	0	2	0	2	1	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0004	933	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0005	933	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0006	933	1	0	0	1	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0007	933	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0008	933	1	0	0	0	1	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q1_chr11_58018881_58186616	0/0	c0009	933	1	1	0	0	0	0	copy fasta	OR9Q1	chr11	58018881	58186616
OR9Q2_chr11_58184070_58199053	0/0	c0001	945	185	22	29	108	5	21	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	1/0	c0002	945	147	44	33	46	7	16	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/1	c0003	945	62	3	17	32	3	6	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0004	945	17	17	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0005	945	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0006	945	1	0	0	0	1	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0008	945	1	0	1	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR9Q2	chr11	58184070	58199053
OR9Q2_chr11_58184070_58199053	0/0	c0011	945	1	0	0	0	0	1	copy fasta	OR9Q2	chr11	58184070	58199053
ORAI2_chr7_102428575_102461825	1/1	c0001	765	247	57	54	84	16	34	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0002	765	140	26	25	74	2	13	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0003	765	4	3	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0004	765	3	2	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0005	765	2	2	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0006	765	2	2	0	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0007	765	2	0	2	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0008	765	1	0	1	0	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0009	765	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0010	765	1	0	0	0	0	1	copy fasta	ORAI2	chr7	102428575	102461825
ORAI2_chr7_102428575_102461825	0/0	c0011	765	1	0	0	1	0	0	copy fasta	ORAI2	chr7	102428575	102461825
ORAI3_chr16_30944068_30959938	0/1	c0001	888	277	79	69	75	17	36	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	1/0	c0002	888	9	8	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	c0003	888	2	0	2	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	c0004	888	1	0	0	1	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	c0005	888	1	0	0	0	1	0	copy fasta	ORAI3	chr16	30944068	30959938