JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ORAI3_chr16_30944068_30959938	0/0	c0006	888	1	1	0	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORAI3_chr16_30944068_30959938	0/0	c0007	888	1	0	1	0	0	0	copy fasta	ORAI3	chr16	30944068	30959938
ORC1_chr1_52367829_52409423	1/1	c0001	2586	233	75	37	87	10	22	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0002	2586	27	0	4	23	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0003	2586	14	14	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0004	2586	11	0	0	6	0	5	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0005	2586	3	3	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0006	2586	3	1	2	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0007	2586	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0008	2586	1	0	0	0	1	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0009	2586	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0010	2586	1	0	0	1	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0011	2586	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0012	2586	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0013	2586	1	1	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0014	2586	1	0	0	0	0	1	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0015	2586	1	0	1	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0016	2586	1	0	0	0	1	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0017	2586	1	0	0	1	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0018	2586	1	1	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC1_chr1_52367829_52409423	0/0	c0019	2586	1	1	0	0	0	0	copy fasta	ORC1	chr1	52367829	52409423
ORC2_chr2_200903977_200968660	1/1	c0001	1734	93	47	19	11	4	10	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	c0002	1734	53	29	15	3	4	2	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	c0003	1734	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	c0004	1734	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	c0005	1734	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC2_chr2_200903977_200968660	0/0	c0006	1734	1	1	0	0	0	0	copy fasta	ORC2	chr2	200903977	200968660
ORC3_chr6_87585135_87672451	1/1	c0001	2136	342	68	69	152	14	37	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0002	2136	11	11	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0003	2136	9	1	3	3	1	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0004	2136	4	4	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0005	2136	3	3	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0006	2136	2	0	0	2	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0007	2136	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0008	2136	1	0	0	0	0	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0009	2136	1	0	0	0	1	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0010	2136	1	0	0	0	0	1	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0011	2136	1	0	0	1	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0012	2136	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC3_chr6_87585135_87672451	0/0	c0013	2136	1	1	0	0	0	0	copy fasta	ORC3	chr6	87585135	87672451
ORC4_chr2_147925396_148025737	1/1	c0001	1311	192	59	31	74	5	21	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	c0002	1311	132	20	31	58	6	17	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	c0003	1311	7	2	2	0	3	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	c0004	1311	2	2	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	c0005	1311	2	0	0	2	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC4_chr2_147925396_148025737	0/0	c0006	1311	1	1	0	0	0	0	copy fasta	ORC4	chr2	147925396	148025737
ORC5_chr7_104121341_104213013	1/1	c0001	1308	342	82	70	134	16	38	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	c0002	1308	17	0	2	9	0	6	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	c0003	1308	4	4	0	0	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	c0004	1308	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013