JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ORC5_chr7_104121341_104213013	0/0	c0005	1308	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC5_chr7_104121341_104213013	0/0	c0006	1308	1	0	0	1	0	0	copy fasta	ORC5	chr7	104121341	104213013
ORC6_chr16_46684659_46703394	1/1	c0001	759	361	78	64	159	12	46	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	c0002	759	5	0	0	5	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORC6_chr16_46684659_46703394	0/0	c0003	759	2	0	2	0	0	0	copy fasta	ORC6	chr16	46684659	46703394
ORM1_chr9_114318098_114331479	0/0	c0000	0	2	0	0	1	1	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/1	c0001	606	305	57	55	156	8	28	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	1/0	c0002	606	120	29	22	42	9	17	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0003	606	12	0	0	12	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0004	606	7	2	1	3	0	1	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0005	606	4	4	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0006	606	4	1	3	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0007	606	2	0	0	2	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0008	7380	1	0	1	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0009	606	1	0	1	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0010	606	1	0	0	1	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0011	606	1	0	0	1	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0012	606	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0013	606	1	0	1	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0014	540	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM1_chr9_114318098_114331479	0/0	c0015	606	1	1	0	0	0	0	copy fasta	ORM1	chr9	114318098	114331479
ORM2_chr9_114324869_114338251	0/1	c0000	0	1	0	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	1/0	c0001	606	354	30	78	185	16	44	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0002	606	17	15	2	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0003	606	13	2	1	8	1	1	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0004	606	10	10	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0005	606	8	8	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0006	606	8	0	0	8	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0007	606	6	6	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0008	606	6	6	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0009	606	4	1	1	0	1	1	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0010	606	4	4	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0011	606	3	0	0	3	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0012	606	2	1	1	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0013	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0014	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0015	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0016	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0017	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0018	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0019	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0020	606	1	0	1	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0021	606	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORM2_chr9_114324869_114338251	0/0	c0022	66	1	1	0	0	0	0	copy fasta	ORM2	chr9	114324869	114338251
ORMDL1_chr2_189765267_189789339	1/1	c0001	462	335	77	67	135	10	44	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	c0002	462	21	20	1	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	c0003	462	1	1	0	0	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL1_chr2_189765267_189789339	0/0	c0004	462	1	0	0	1	0	0	copy fasta	ORMDL1	chr2	189765267	189789339
ORMDL2_chr12_55813041_55826879	1/1	c0001	462	416	94	80	181	18	41	copy fasta	ORMDL2	chr12	55813041	55826879
ORMDL2_chr12_55813041_55826879	0/0	c0002	462	2	0	0	1	0	1	copy fasta	ORMDL2	chr12	55813041	55826879