JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ORMDL3_chr17_39916043_39932601	1/1	c0001	462	408	91	72	185	18	40	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	c0002	462	1	0	0	1	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
ORMDL3_chr17_39916043_39932601	0/0	c0003	462	1	1	0	0	0	0	copy fasta	ORMDL3	chr17	39916043	39932601
OS9_chr12_57689132_57726557	1/0	c0001	2004	228	57	46	91	9	24	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/1	c0002	2004	97	26	17	32	5	16	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0003	2004	9	8	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0004	2004	6	0	0	6	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0005	2004	3	2	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0006	2004	1	0	0	0	0	1	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0007	2004	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0008	1994	1	0	0	1	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0009	2004	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0010	2004	1	1	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0011	2004	1	0	0	0	0	1	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0012	2004	1	0	1	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0013	2004	1	1	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OS9_chr12_57689132_57726557	0/0	c0014	2004	1	1	0	0	0	0	copy fasta	OS9	chr12	57689132	57726557
OSBP2_chr22_30689874_30912813	0/0	c0001	2751	69	11	7	29	7	15	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0002	2751	59	10	10	33	0	6	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0003	2751	28	4	3	15	4	2	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	1/0	c0004	2751	25	2	7	7	2	6	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0005	2751	17	8	8	0	1	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0006	2751	8	3	3	1	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0007	2751	6	6	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0008	2751	6	1	5	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0009	2751	5	5	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0010	2751	5	2	3	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0011	2751	5	0	4	0	1	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0012	2751	3	3	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0013	2751	3	3	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0014	2751	3	3	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0015	2751	3	3	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0016	2751	3	2	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0017	2751	2	0	1	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/1	c0018	2751	2	0	0	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0019	2751	2	0	0	0	0	2	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0020	2751	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0021	2751	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0022	2751	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0023	2751	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0024	2751	1	0	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0025	2751	1	0	0	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0026	2751	1	1	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0027	2751	1	0	0	1	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0028	2751	1	1	0	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0029	2751	1	0	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0030	2751	1	0	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0031	2751	1	0	1	0	0	0	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0032	2751	1	0	0	0	0	1	copy fasta	OSBP2	chr22	30689874	30912813
OSBP2_chr22_30689874_30912813	0/0	c0033	2751	1	0	0	0	1	0	copy fasta	OSBP2	chr22	30689874	30912813