JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSBPL10_chr3_31655825_31986262	0/0	c0001	2295	55	43	8	0	2	2	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	1/1	c0002	2295	29	6	11	2	2	6	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0003	2295	22	1	5	7	4	5	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0004	2295	12	1	4	6	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0005	2295	11	0	3	8	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0006	2295	6	3	1	1	1	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0007	2295	5	0	0	5	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0008	2296	4	4	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0009	2295	4	0	0	4	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0010	2295	4	0	1	0	1	2	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0011	2296	3	0	0	3	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0012	2295	3	0	0	2	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0013	2296	2	0	0	1	0	1	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0014	2295	2	0	0	2	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0015	2296	1	0	1	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0016	2296	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0017	2296	1	0	1	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0018	2296	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0019	2296	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0020	2296	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0021	2296	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0022	2296	1	0	1	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0023	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0024	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0025	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0026	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0027	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0028	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0029	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0030	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0031	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0032	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0033	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0034	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0035	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0036	2295	1	1	0	0	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0037	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL10_chr3_31655825_31986262	0/0	c0038	2295	1	0	0	1	0	0	copy fasta	OSBPL10	chr3	31655825	31986262
OSBPL11_chr3_125523858_125600497	1/1	c0001	2244	310	77	52	138	9	32	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0002	2244	22	0	4	13	1	4	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0003	2244	3	3	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0004	2244	2	0	2	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0005	2244	1	0	0	1	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0006	2244	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL11_chr3_125523858_125600497	0/0	c0007	2244	1	1	0	0	0	0	copy fasta	OSBPL11	chr3	125523858	125600497
OSBPL1A_chr18_24157052_24402824	1/1	c0001	2853	108	34	22	28	6	16	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0002	2853	45	29	6	3	2	5	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0003	2853	18	13	0	4	0	1	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0004	2853	17	15	0	2	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0005	2853	6	1	5	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824