JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSBPL1A_chr18_24157052_24402824	0/0	c0006	2853	3	3	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0007	2853	2	0	1	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0008	2853	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0009	2853	1	0	0	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0010	2853	1	0	1	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0011	2853	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0012	2853	1	0	1	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL1A_chr18_24157052_24402824	0/0	c0014	2853	1	0	0	1	0	0	copy fasta	OSBPL1A	chr18	24157052	24402824
OSBPL2_chr20_62233521_62301183	1/1	c0001	1443	335	80	71	131	14	37	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0002	1443	5	4	1	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0003	1443	3	3	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0004	1443	2	2	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0005	1443	1	0	0	0	0	1	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0006	1443	1	1	0	0	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL2_chr20_62233521_62301183	0/0	c0007	1443	1	0	0	1	0	0	copy fasta	OSBPL2	chr20	62233521	62301183
OSBPL3_chr7_24791540_24985178	1/1	c0001	2664	153	69	41	24	5	12	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0002	2664	131	5	24	80	1	21	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0003	2664	10	0	0	10	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0004	2664	9	8	1	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0005	2664	5	0	1	0	2	2	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0006	2664	3	0	0	3	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0007	2664	2	0	0	2	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0008	2664	2	0	0	0	2	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0009	2664	1	0	0	0	0	1	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0010	2664	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0011	2664	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0012	2664	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0013	2664	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0014	2664	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0015	2664	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0016	2664	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0017	2664	1	1	0	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0018	2664	1	0	1	0	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL3_chr7_24791540_24985178	0/0	c0019	2664	1	0	0	1	0	0	copy fasta	OSBPL3	chr7	24791540	24985178
OSBPL5_chr11_3082107_3170310	1/0	c0001	2640	151	15	30	86	5	14	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/1	c0002	2640	75	37	19	5	7	6	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0003	2640	36	13	5	9	1	8	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0004	2640	15	6	1	2	1	5	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0005	2640	8	6	1	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0006	2640	4	4	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0007	2640	4	4	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0008	2640	3	2	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0009	2640	3	0	2	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0010	2640	3	0	2	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0011	2640	3	2	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0012	2640	2	0	2	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0013	2640	2	2	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0014	2640	2	0	0	0	0	2	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0015	2640	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310