JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSBPL5_chr11_3082107_3170310	0/0	c0016	2640	1	0	0	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0017	2640	1	0	0	0	0	1	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0018	2640	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0019	2640	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0020	2640	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0021	2640	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0022	2640	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0023	2640	1	0	0	1	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0024	2640	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0025	2640	1	0	1	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0026	2640	1	0	0	0	1	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0027	2640	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0028	2640	1	0	0	0	1	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL5_chr11_3082107_3170310	0/0	c0029	2640	1	1	0	0	0	0	copy fasta	OSBPL5	chr11	3082107	3170310
OSBPL6_chr2_178189512_178407893	0/1	c0001	2805	156	48	30	37	10	30	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	1/0	c0002	2805	22	11	2	2	1	5	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0003	2805	9	2	6	0	1	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0004	2805	4	4	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0005	2805	2	0	0	2	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0006	2805	2	0	0	1	0	1	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0007	2805	2	2	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0008	2805	2	0	0	2	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL6_chr2_178189512_178407893	0/0	c0009	2805	1	1	0	0	0	0	copy fasta	OSBPL6	chr2	178189512	178407893
OSBPL7_chr17_47802372_47826794	0/1	c0001	2529	150	10	32	87	4	16	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0002	2529	107	47	17	28	2	13	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	1/0	c0003	2529	86	25	17	36	2	5	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0004	2529	37	7	16	2	5	7	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0005	2529	4	4	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0006	2529	3	0	0	3	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0007	2529	3	0	0	3	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0008	2529	3	3	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0009	2529	2	2	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0010	2529	2	2	0	0	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0011	2529	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0012	2529	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0013	2529	1	0	0	0	1	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0014	2529	1	0	0	0	0	1	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL7_chr17_47802372_47826794	0/0	c0015	2529	1	0	0	1	0	0	copy fasta	OSBPL7	chr17	47802372	47826794
OSBPL8_chr12_76346797_76564771	1/1	c0001	2670	232	78	52	61	8	31	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0002	2670	1	0	0	0	0	1	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0003	2670	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0004	2670	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0005	2670	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0006	2670	1	0	0	1	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL8_chr12_76346797_76564771	0/0	c0007	2670	1	1	0	0	0	0	copy fasta	OSBPL8	chr12	76346797	76564771
OSBPL9_chr1_51612092_51794219	1/1	c0001	2211	177	74	36	44	10	11	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0002	2211	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0003	2211	2	2	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0004	2211	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0005	2211	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219