JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSBPL9_chr1_51612092_51794219	0/0	c0006	2211	1	0	0	0	0	1	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0007	2211	1	1	0	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBPL9_chr1_51612092_51794219	0/0	c0008	2211	1	0	1	0	0	0	copy fasta	OSBPL9	chr1	51612092	51794219
OSBP_chr11_59569398_59620774	1/1	c0001	2424	292	72	64	125	4	25	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0002	2424	15	15	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0003	2424	3	2	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0004	2424	2	0	2	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0005	2424	2	1	1	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0006	2424	1	1	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0007	2424	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0008	2424	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0009	2424	1	0	0	1	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0010	2424	1	0	0	0	0	1	copy fasta	OSBP	chr11	59569398	59620774
OSBP_chr11_59569398_59620774	0/0	c0011	2424	1	1	0	0	0	0	copy fasta	OSBP	chr11	59569398	59620774
OSCAR_chr19_54089668_54105803	0/1	c0001	792	279	65	59	114	14	26	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0002	792	79	0	9	64	0	6	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0003	792	28	6	6	9	0	7	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0004	792	27	12	1	10	2	2	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0005	792	7	0	6	1	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0006	792	6	0	0	6	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0007	792	6	6	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0008	792	3	0	0	3	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0009	792	3	2	0	0	0	1	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0010	792	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0011	792	1	0	1	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0012	792	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0013	792	1	0	0	1	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCAR_chr19_54089668_54105803	0/0	c0014	792	1	1	0	0	0	0	copy fasta	OSCAR	chr19	54089668	54105803
OSCP1_chr1_36412906_36455451	1/0	c0001	1140	209	57	36	80	10	25	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/1	c0002	1140	77	6	14	51	3	2	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	c0003	1140	73	13	8	40	3	9	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	c0004	1140	16	16	0	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	c0005	1140	2	0	2	0	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	c0006	1140	2	0	0	2	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSCP1_chr1_36412906_36455451	0/0	c0007	1140	1	0	0	1	0	0	copy fasta	OSCP1	chr1	36412906	36455451
OSER1_chr20_44190939_44215771	1/0	c0001	879	254	37	61	107	14	34	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0002	879	149	37	8	89	2	13	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0003	879	13	11	2	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0004	879	11	2	1	8	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0005	879	10	9	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/1	c0006	879	5	0	2	1	0	1	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0007	879	1	0	0	1	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSER1_chr20_44190939_44215771	0/0	c0008	879	1	0	1	0	0	0	copy fasta	OSER1	chr20	44190939	44215771
OSGEPL1_chr2_189741660_189767792	0/1	c0001	1245	314	75	71	134	10	23	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	c0002	1245	19	11	1	4	0	3	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	c0003	1245	10	0	0	6	0	4	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	1/0	c0004	1245	8	7	0	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	c0005	1245	6	5	1	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEPL1_chr2_189741660_189767792	0/0	c0006	1245	1	0	1	0	0	0	copy fasta	OSGEPL1	chr2	189741660	189767792
OSGEP_chr14_20441401_20459812	0/1	c0001	1008	239	55	37	111	12	23	copy fasta	OSGEP	chr14	20441401	20459812