JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSGEP_chr14_20441401_20459812	1/0	c0002	1008	195	31	44	103	6	10	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	c0003	1008	22	5	1	8	0	8	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	c0004	1008	1	0	0	1	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	c0005	1008	1	0	0	0	0	1	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	c0006	1008	1	0	0	1	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGEP_chr14_20441401_20459812	0/0	c0007	1008	1	1	0	0	0	0	copy fasta	OSGEP	chr14	20441401	20459812
OSGIN1_chr16_83948240_83971332	1/1	c0001	1434	194	13	48	93	9	29	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0002	1434	68	50	2	11	1	4	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0003	1434	45	23	4	9	1	8	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0004	1434	14	1	3	3	2	5	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0005	1434	6	0	3	3	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0006	1434	5	5	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0007	1434	4	3	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0008	1434	3	0	3	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0009	1434	2	0	0	0	2	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0010	1434	1	0	0	0	1	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0011	1434	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0013	1434	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0014	1434	1	0	0	1	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0015	1434	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0016	1434	1	1	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0017	1434	1	1	0	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN1_chr16_83948240_83971332	0/0	c0018	1434	1	0	1	0	0	0	copy fasta	OSGIN1	chr16	83948240	83971332
OSGIN2_chr8_89897570_89932888	1/1	c0001	1650	395	77	64	194	16	42	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0002	1650	8	8	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0003	1650	7	6	1	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0004	1650	4	4	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0005	1650	2	0	0	2	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0006	1650	1	0	1	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0007	1650	1	1	0	0	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0008	1650	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSGIN2_chr8_89897570_89932888	0/0	c0009	1650	1	0	0	1	0	0	copy fasta	OSGIN2	chr8	89897570	89932888
OSMR_chr5_38841012_38940641	1/1	c0001	2940	225	41	52	96	8	26	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0002	2940	38	2	1	35	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0003	2940	32	12	6	5	2	7	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0004	2940	23	12	4	0	2	5	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0005	2940	16	3	1	11	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0006	2940	12	1	0	11	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0007	2940	4	4	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0008	2940	4	4	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0009	2940	3	3	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0010	2940	3	3	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0011	2940	3	0	0	3	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0012	2940	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0013	2940	2	0	0	2	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0014	2940	2	2	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0015	2940	2	0	0	2	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0016	2940	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0017	2940	1	0	1	0	0	0	copy fasta	OSMR	chr5	38841012	38940641