JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTC_chrX_38347604_38426446	1/1	c0001	1065	265	45	41	134	11	32	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0002	1065	35	26	8	0	1	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0003	1065	3	3	0	0	0	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0004	1065	2	2	0	0	0	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0006	1065	1	0	0	0	1	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	c0007	1065	1	0	1	0	0	0	copy fasta	OTC	chrX	38347604	38426446
OTOA_chr16_21658968_21765729	1/1	c0001	3420	187	59	35	64	9	18	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0002	3420	63	0	15	38	2	8	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0003	3420	43	10	8	22	0	3	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0004	3420	9	3	2	1	3	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0005	3420	6	1	1	3	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0006	3420	2	1	1	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0007	3420	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0008	3420	1	0	1	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0009	3420	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0010	3420	1	0	0	0	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0011	3420	1	0	1	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0012	3420	1	1	0	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0013	3420	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0014	3420	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0015	3420	1	0	0	0	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	c0016	3420	1	1	0	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOF_chr2_26452203_26483124	0/0	c0001	3693	132	15	29	67	7	14	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	1/0	c0002	3693	55	5	21	4	7	17	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0003	3693	20	0	2	17	0	1	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0004	3693	15	13	2	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0005	3693	13	0	4	9	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0006	3693	10	10	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0007	3693	9	7	2	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0008	3693	8	7	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0009	3693	8	7	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0010	3693	7	0	0	6	0	1	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0011	3693	5	0	3	0	2	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0012	3693	5	4	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0013	3693	4	4	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0014	3693	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0015	3693	3	2	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0016	3693	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0017	3693	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0018	3693	2	0	0	2	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/1	c0019	3693	2	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0020	3693	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0021	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0022	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0023	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0024	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0025	3693	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0026	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0027	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124