JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOF_chr2_26452203_26483124	0/0	c0028	3693	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0029	3693	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0030	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0031	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0032	3705	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0033	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0034	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0035	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0036	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0037	3693	1	0	0	0	0	1	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0038	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0039	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0040	3693	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0041	3693	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	c0042	3693	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26563756	0/0	c0001	5994	26	8	5	11	0	2	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0002	5994	21	0	2	13	1	5	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0003	5994	18	0	9	3	1	5	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0004	5994	15	0	3	3	2	7	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0005	5994	12	11	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	1/0	c0006	5994	11	0	3	0	0	7	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0007	5994	9	8	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0008	5994	9	0	9	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0009	5994	8	7	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0010	5994	7	6	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0011	5994	7	0	4	0	2	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0012	5994	7	7	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0013	5994	7	0	0	7	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0014	5994	6	0	3	3	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0015	5994	5	0	0	5	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0016	5994	4	4	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0017	5994	4	3	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0018	5994	4	0	0	3	0	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0019	5994	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0020	5994	3	0	1	0	2	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0021	5994	3	1	2	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0022	5994	3	0	2	0	0	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0023	5994	3	0	0	3	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0024	5994	3	0	0	3	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0025	5994	3	0	0	3	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0026	5994	3	3	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0027	5994	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0028	5994	2	0	0	2	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0029	5994	2	1	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0030	5994	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0031	5994	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0032	5994	2	0	0	1	0	1	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0033	5994	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0034	5994	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0035	5994	2	0	1	0	0	1	copy fasta	OTOF	chr2	26452203	26563756