JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOF_chr2_26452203_26563756	0/0	c0086	5994	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0087	5994	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0088	5994	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0089	5994	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOF_chr2_26452203_26563756	0/0	c0090	5994	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26563756
OTOGL_chr12_80094537_80385880	0/1	c0001	7062	45	10	13	13	0	8	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0002	7062	15	5	4	5	0	1	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0003	7062	15	12	3	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0004	7062	10	5	3	1	0	1	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0005	7062	9	4	2	0	0	3	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0006	7062	8	1	1	4	0	2	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0007	7062	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0008	7062	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0009	7062	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0010	7062	4	4	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0011	7062	4	0	4	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0012	7062	3	3	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0013	7062	3	0	3	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0014	7062	3	2	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0015	7062	2	1	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0016	7062	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0017	7062	2	0	0	2	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0018	7062	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0019	7062	2	0	0	2	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0020	7062	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0021	7062	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0022	7062	2	1	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0023	7062	2	2	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0024	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0025	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0026	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0027	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0028	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0029	7062	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0030	7062	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0031	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0032	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0033	7062	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0034	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0035	7062	1	0	0	1	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	1/0	c0036	7062	1	0	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0037	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0038	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0039	7062	1	0	0	0	0	1	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0040	7062	1	0	1	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0041	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOGL_chr12_80094537_80385880	0/0	c0042	7062	1	1	0	0	0	0	copy fasta	OTOGL	chr12	80094537	80385880
OTOG_chr11_17542259_17651044	0/0	c0001	8742	33	0	5	21	2	5	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	1/0	c0002	8742	12	0	7	3	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0003	8742	6	0	0	6	0	0	copy fasta	OTOG	chr11	17542259	17651044