JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOG_chr11_17542259_17651044	0/0	c0004	8742	4	2	0	0	1	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0005	8742	4	0	1	1	1	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/1	c0006	8742	4	0	0	3	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0007	8742	4	0	0	4	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0008	8742	4	1	1	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0009	8742	4	0	0	4	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0010	8742	3	2	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0011	8742	3	0	0	1	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0012	8742	3	0	0	0	0	3	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0013	8742	2	0	0	0	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0014	8742	2	0	1	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0015	8742	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0016	8742	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0017	8742	2	1	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0018	8742	2	0	0	0	0	2	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0019	8742	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0020	8742	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0021	8742	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0022	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0023	8742	2	1	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0024	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0025	8742	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0026	8742	2	0	0	2	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0027	8742	2	0	0	0	2	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0028	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0029	8742	2	0	1	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0030	8742	2	0	2	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0031	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0032	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0033	8742	2	0	1	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0034	8742	2	2	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0035	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0036	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0037	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0038	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0039	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0040	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0041	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0042	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0043	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0044	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0045	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0046	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0047	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0048	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0049	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0050	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0051	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0052	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0053	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044