JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOG_chr11_17542259_17651044	0/0	c0104	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0105	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0106	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0107	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0108	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0109	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0110	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0111	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0112	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0113	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0114	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0115	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0116	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0117	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0118	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0119	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0120	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0121	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0122	8742	1	0	0	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0123	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0124	8742	1	0	0	0	1	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0125	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0126	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0127	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0128	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0129	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0130	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0131	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0132	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0133	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0134	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0135	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0136	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0137	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0138	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0139	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0140	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0141	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0142	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0143	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0144	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0145	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0146	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0147	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0148	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0149	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0150	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0151	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0152	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0153	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044