JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOG_chr11_17542259_17651044	0/0	c0154	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0155	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0156	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0157	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0158	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0159	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0160	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0161	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0162	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0163	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0164	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0165	8742	1	0	0	1	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0166	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0167	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0168	8742	1	0	1	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0169	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0170	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0171	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0172	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0173	8742	1	1	0	0	0	0	copy fasta	OTOG	chr11	17542259	17651044
OTOG_chr11_17542259_17651044	0/0	c0174	8742	1	0	0	0	0	1	copy fasta	OTOG	chr11	17542259	17651044
OTOL1_chr3_161491808_161508942	1/0	c0001	1434	239	28	46	144	7	13	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/1	c0002	1434	172	40	35	59	9	28	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0003	1434	22	20	2	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0004	1434	4	4	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0005	1434	2	0	0	0	0	2	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0006	1434	2	2	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0007	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0008	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0010	1429	1	0	1	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0011	1434	1	0	0	0	0	1	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0013	1434	1	0	0	1	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOL1_chr3_161491808_161508942	0/0	c0015	1434	1	1	0	0	0	0	copy fasta	OTOL1	chr3	161491808	161508942
OTOP1_chr4_4183726_4231929	0/0	c0001	1839	204	35	30	115	7	17	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	1/0	c0002	1839	85	5	22	48	2	7	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0003	1839	27	10	3	14	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0004	1839	22	1	8	3	1	9	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/1	c0005	1839	17	0	7	6	1	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0006	1833	12	4	4	0	2	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0007	1833	10	0	10	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0008	1839	8	8	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0009	1839	7	7	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0010	1839	7	6	1	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0011	1839	4	0	1	0	1	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0012	1833	4	2	0	0	0	2	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0013	1839	4	4	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0014	1833	2	2	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929