JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOP1_chr4_4183726_4231929	0/0	c0015	1839	2	2	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0016	1833	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0017	1839	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0018	1833	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0019	1839	1	0	0	0	0	1	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0020	1839	1	0	0	1	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0021	1833	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0022	1839	1	0	0	1	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0023	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0024	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0025	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0026	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0027	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP1_chr4_4183726_4231929	0/0	c0028	1839	1	1	0	0	0	0	copy fasta	OTOP1	chr4	4183726	4231929
OTOP2_chr17_74919273_74938912	0/1	c0001	1689	217	25	52	100	13	26	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	1/0	c0002	1689	153	37	15	79	5	16	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0003	1689	13	11	2	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0004	1689	8	7	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0005	1689	6	5	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0006	1689	5	4	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0007	1689	5	0	0	5	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0008	1689	4	1	1	0	0	2	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0009	1689	3	3	0	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0010	1689	3	0	0	0	0	3	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0011	1689	2	1	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0012	1689	2	1	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0013	1689	2	0	0	2	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0014	1689	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0015	1689	1	0	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0016	1689	1	0	0	0	0	1	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0017	1689	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0018	1689	1	1	0	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0019	1689	1	0	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0020	1689	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0021	1689	1	0	0	1	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP2_chr17_74919273_74938912	0/0	c0022	1689	1	0	1	0	0	0	copy fasta	OTOP2	chr17	74919273	74938912
OTOP3_chr17_74930898_74954992	0/0	c0001	1737	100	14	12	66	3	5	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0002	1737	89	11	40	15	3	20	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/1	c0003	1737	82	5	14	56	1	5	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0004	1737	80	5	6	54	4	11	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0005	1737	30	25	3	0	0	2	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	1/0	c0006	1737	26	6	5	5	6	3	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0007	1737	6	5	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0008	1737	6	6	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0009	1737	5	5	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0010	1737	3	0	0	3	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0011	1737	3	3	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0012	1737	3	2	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0013	1737	2	0	2	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0014	1737	2	0	0	2	0	0	copy fasta	OTOP3	chr17	74930898	74954992