JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTOP3_chr17_74930898_74954992	0/0	c0015	1737	2	2	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0016	1737	2	1	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0017	1737	2	0	0	0	0	2	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0018	1737	2	0	0	2	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0019	1737	2	0	0	0	0	2	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0020	1737	2	2	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0021	1737	2	2	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0022	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0023	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0024	1758	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0025	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0026	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0027	1775	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0028	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0029	1737	1	0	0	0	1	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0030	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0031	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0032	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0033	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0034	1737	1	0	1	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0035	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0036	1737	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0037	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	c0038	1737	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOR_chr20_16743358_16757164	1/1	c0001	387	364	94	68	162	9	29	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	c0002	387	109	6	9	76	2	16	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	c0003	387	13	0	7	0	5	1	copy fasta	OTOR	chr20	16743358	16757164
OTOS_chr2_240134026_240145658	1/1	c0001	270	430	89	78	196	16	49	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	c0002	270	3	3	0	0	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	c0003	270	2	0	0	2	0	0	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	c0004	270	1	0	0	0	0	1	copy fasta	OTOS	chr2	240134026	240145658
OTP_chr5_77623712_77643713	0/1	c0001	978	427	81	79	204	14	48	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	0/0	c0002	978	10	9	1	0	0	0	copy fasta	OTP	chr5	77623712	77643713
OTP_chr5_77623712_77643713	1/0	c0003	978	3	0	0	0	2	0	copy fasta	OTP	chr5	77623712	77643713
OTUB1_chr11_63981438_64003412	1/1	c0001	816	327	89	61	122	12	41	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	c0002	816	2	1	1	0	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	c0003	710	1	0	0	0	0	1	copy fasta	OTUB1	chr11	63981438	64003412
OTUB2_chr14_94021340_94053930	0/0	c0001	705	203	58	36	84	8	17	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/1	c0002	705	174	25	29	87	10	22	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	c0003	705	9	9	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	c0004	705	5	4	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	c0005	705	2	2	0	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	c0006	705	1	0	0	1	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	c0007	705	1	0	0	0	0	1	copy fasta	OTUB2	chr14	94021340	94053930
OTUD1_chr10_23434075_23447377	1/1	c0001	1446	327	63	72	139	15	36	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0002	1446	53	0	0	51	0	2	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0003	1446	27	22	0	5	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0004	1446	7	7	0	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0005	1446	4	4	0	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0006	1446	4	0	3	0	1	0	copy fasta	OTUD1	chr10	23434075	23447377