JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTUD6A_chrX_70057457_70069179	0/0	c0012	867	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0013	867	1	1	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0014	877	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6B_chr8_91065344_91092093	0/0	c0001	882	182	26	29	99	7	21	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	1/1	c0002	882	162	57	31	58	5	9	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	c0003	882	25	6	2	17	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	c0004	882	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	c0005	882	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	c0006	882	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD7A_chr15_31470398_31875673	0/0	c0001	2799	112	28	27	49	2	6	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0002	2799	55	22	10	19	0	4	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0003	2802	19	1	5	4	2	7	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0004	2799	11	11	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0005	2802	8	4	3	1	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0006	2799	7	7	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0007	2802	6	0	0	6	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0008	2802	4	0	2	2	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0009	2799	3	3	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0010	2799	3	2	1	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0011	2799	2	2	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0012	2799	2	0	2	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0013	2799	2	0	0	2	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0014	2802	2	2	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0015	2799	1	1	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0016	2799	1	0	0	1	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0017	2799	1	1	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0018	2799	1	1	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0019	2802	1	0	0	0	0	1	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0020	2814	1	0	1	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0021	2799	1	0	1	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7A_chr15_31470398_31875673	0/0	c0022	2799	1	1	0	0	0	0	copy fasta	OTUD7A	chr15	31470398	31875673
OTUD7B_chr1_149932812_150015726	1/1	c0001	2532	256	69	38	117	6	24	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0002	2532	8	0	8	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0003	2532	7	7	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0004	2532	2	2	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0005	2532	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0006	2532	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0007	2532	1	1	0	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0008	2532	1	0	0	1	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTUD7B_chr1_149932812_150015726	0/0	c0009	2532	1	0	1	0	0	0	copy fasta	OTUD7B	chr1	149932812	150015726
OTULINL_chr5_14576792_14621180	1/1	c0001	1071	356	81	62	156	13	42	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0002	1071	9	7	2	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0003	1071	5	0	0	4	0	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0004	1071	3	0	1	0	1	1	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0005	1071	2	2	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0006	1071	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0007	1071	1	0	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0008	1071	1	0	0	1	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0009	1071	1	0	1	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180
OTULINL_chr5_14576792_14621180	0/0	c0010	1071	1	1	0	0	0	0	copy fasta	OTULINL	chr5	14576792	14621180