JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTULIN_chr5_14659718_14704850	1/1	c0001	1059	312	55	55	157	8	35	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0002	1038	15	15	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0003	1059	11	9	2	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0004	1059	5	4	1	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0005	1059	3	3	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0006	1059	2	0	0	0	0	2	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0007	1059	2	2	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0008	1059	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0010	1059	1	0	0	0	0	1	copy fasta	OTULIN	chr5	14659718	14704850
OTULIN_chr5_14659718_14704850	0/0	c0011	1059	1	0	0	1	0	0	copy fasta	OTULIN	chr5	14659718	14704850
OTX1_chr2_63045830_63062831	1/1	c0001	1065	308	78	49	124	13	42	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	c0002	1065	56	2	17	30	1	6	copy fasta	OTX1	chr2	63045830	63062831
OTX1_chr2_63045830_63062831	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	OTX1	chr2	63045830	63062831
OTX2_chr14_56794905_56815479	1/1	c0001	894	400	93	74	170	14	47	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	c0002	894	2	1	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	c0003	894	1	0	1	0	0	0	copy fasta	OTX2	chr14	56794905	56815479
OTX2_chr14_56794905_56815479	0/0	c0004	894	1	0	0	0	0	1	copy fasta	OTX2	chr14	56794905	56815479
OVCA2_chr17_2037022_2048425	1/1	c0001	684	372	88	68	163	14	37	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0002	684	4	0	0	0	0	4	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0003	684	3	0	0	0	0	3	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0004	684	1	0	1	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0005	684	1	1	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0006	684	1	0	1	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0007	684	1	0	0	1	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCA2_chr17_2037022_2048425	0/0	c0008	684	1	1	0	0	0	0	copy fasta	OVCA2	chr17	2037022	2048425
OVCH1_chr12_29434853_29502686	0/0	c0001	3273	72	8	19	28	5	12	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0002	3273	68	4	7	47	3	7	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0003	3273	48	6	6	25	4	7	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0004	3273	21	1	2	13	0	5	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0005	3273	14	0	1	12	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0006	3273	10	0	0	9	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0007	3273	10	1	0	9	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0008	3273	10	2	8	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0009	3273	9	8	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0010	3273	9	0	1	7	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0011	3273	7	7	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0012	3273	6	5	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0013	3273	6	5	1	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0014	3273	6	0	0	6	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0015	3273	4	0	3	0	1	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0016	3273	4	0	0	4	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0017	3273	4	1	1	1	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0018	3273	4	4	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0019	3273	4	0	0	2	0	2	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0020	3273	4	0	1	2	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0021	3273	3	3	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/1	c0022	3273	3	1	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0023	3273	3	0	1	1	1	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0024	3273	3	3	0	0	0	0	copy fasta	OVCH1	chr12	29434853	29502686