JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OVCH1_chr12_29434853_29502686	0/0	c0075	3273	1	0	0	0	0	1	copy fasta	OVCH1	chr12	29434853	29502686
OVCH1_chr12_29434853_29502686	0/0	c0076	3273	1	0	0	1	0	0	copy fasta	OVCH1	chr12	29434853	29502686
OVCH2_chr11_7684437_7711477	0/1	c0001	1698	159	13	22	101	6	16	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0002	1698	150	20	36	66	3	25	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0003	1698	21	1	0	16	3	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0004	1698	19	18	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0005	1698	14	1	1	11	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0006	1698	12	0	0	12	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0007	1698	11	1	4	0	4	2	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0008	1698	10	2	4	4	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0009	2014	7	6	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0010	1698	6	1	3	0	0	2	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0011	1698	6	4	0	2	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0012	1698	6	0	4	2	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0013	1698	4	0	0	4	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0014	2014	4	4	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0015	1698	4	3	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0016	1698	3	3	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0017	1698	3	2	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0018	2015	3	3	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0019	1698	3	0	0	3	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0020	1698	3	2	0	0	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0021	1698	2	0	0	2	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0022	1698	2	2	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0023	1698	2	1	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0024	1698	2	0	2	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0025	1698	2	2	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0026	1698	1	0	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0027	2016	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0028	1698	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0029	1698	1	0	0	1	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0030	1698	1	0	0	0	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0031	1698	1	0	0	1	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0032	1698	1	0	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0033	1698	1	0	0	1	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	1/0	c0034	1698	1	0	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0035	1698	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0036	1698	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0037	2013	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0038	2014	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0039	2014	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0040	2014	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0041	1698	1	0	1	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0042	1698	1	1	0	0	0	0	copy fasta	OVCH2	chr11	7684437	7711477
OVCH2_chr11_7684437_7711477	0/0	c0043	1698	1	0	0	0	0	1	copy fasta	OVCH2	chr11	7684437	7711477
OVGP1_chr1_111409319_111432735	1/1	c0001	2037	118	14	41	40	10	11	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0002	2037	84	11	7	48	0	18	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0003	1968	49	5	9	27	2	6	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0004	2037	45	0	2	36	0	7	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0005	2013	15	0	3	11	1	0	copy fasta	OVGP1	chr1	111409319	111432735