JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OVGP1_chr1_111409319_111432735	0/0	c0006	2037	8	0	0	7	0	1	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0007	1968	7	0	0	4	1	2	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0008	1968	7	4	1	2	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0009	2037	7	0	0	7	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0010	2037	6	3	2	0	0	1	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0011	1992	6	6	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0012	2013	5	5	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0013	2037	5	5	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0014	2037	5	4	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0015	2058	4	4	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0016	2058	4	4	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0017	1968	3	0	2	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0018	1968	3	1	1	0	0	1	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0019	2082	3	0	0	2	0	1	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0020	2013	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0021	2037	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0022	2037	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0023	2013	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0024	2037	3	3	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0025	2013	2	2	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0026	2037	2	2	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0027	2037	2	0	0	2	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0028	2037	2	0	0	2	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0029	1968	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0030	1992	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0031	2013	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0032	2013	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0033	2013	1	0	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0034	2013	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0035	2013	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0036	2037	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0037	2058	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0038	2058	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0039	2037	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0040	1923	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0041	2037	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0042	2013	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0043	2037	1	0	0	1	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0044	2037	1	1	0	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVGP1_chr1_111409319_111432735	0/0	c0045	1968	1	0	1	0	0	0	copy fasta	OVGP1	chr1	111409319	111432735
OVOL1_chr11_65782063_65802214	1/1	c0001	804	440	94	74	220	16	34	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	c0002	804	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	c0003	804	1	1	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	c0004	804	1	1	0	0	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL1_chr11_65782063_65802214	0/0	c0005	804	1	0	0	1	0	0	copy fasta	OVOL1	chr11	65782063	65802214
OVOL2_chr20_18019163_18062916	1/1	c0001	828	370	83	75	150	16	44	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	c0002	828	12	8	1	1	0	2	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	c0003	828	2	2	0	0	0	0	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	c0004	828	1	0	0	1	0	0	copy fasta	OVOL2	chr20	18019163	18062916
OVOL2_chr20_18019163_18062916	0/0	c0005	828	1	1	0	0	0	0	copy fasta	OVOL2	chr20	18019163	18062916