JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OVOL3_chr19_36106143_36118711	0/0	c0001	573	237	52	46	111	11	17	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	1/1	c0002	573	180	31	27	86	7	27	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0003	573	8	0	0	7	0	1	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0004	573	8	8	0	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0005	573	5	0	0	4	0	1	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0006	573	4	3	1	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0007	573	4	0	4	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0008	573	2	0	2	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0009	573	1	1	0	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OVOL3_chr19_36106143_36118711	0/0	c0010	573	1	1	0	0	0	0	copy fasta	OVOL3	chr19	36106143	36118711
OXA1L_chr14_22761688_22778042	0/1	c0001	1308	234	20	53	127	11	22	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	1/0	c0002	1308	90	41	7	32	1	8	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0003	1311	86	3	17	47	5	14	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0004	1308	35	17	5	11	0	2	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0005	1311	12	10	1	0	1	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0006	1308	3	3	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0007	1308	3	3	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0008	1308	1	1	0	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0009	1311	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0010	1311	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0011	1308	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0012	1308	1	0	0	1	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0013	1311	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXA1L_chr14_22761688_22778042	0/0	c0014	1311	1	0	1	0	0	0	copy fasta	OXA1L	chr14	22761688	22778042
OXCT1_chr5_41725065_41875425	1/1	c0001	1563	189	72	49	28	8	30	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0002	1563	6	6	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0003	1563	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0004	1563	1	0	1	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0006	1563	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT1_chr5_41725065_41875425	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	OXCT1	chr5	41725065	41875425
OXCT2_chr1_39764523_39776348	1/1	c0001	1554	262	31	39	153	7	30	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0002	1554	93	37	17	29	5	5	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0003	1554	26	2	11	6	1	6	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0004	1535	23	0	0	20	0	3	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0005	1554	13	13	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0006	1535	5	5	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0007	1554	5	0	0	5	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0008	1535	4	0	0	4	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0009	1554	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0010	1554	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0011	1554	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0012	1535	2	0	0	2	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0013	1535	2	0	1	0	1	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0014	1535	2	2	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0015	1554	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0016	1535	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0017	1554	1	0	1	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0018	1554	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0019	1554	1	1	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348