JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OXCT2_chr1_39764523_39776348	0/0	c0020	1554	1	1	0	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0021	1554	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0022	1554	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0023	1554	1	0	1	0	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0024	1554	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXCT2_chr1_39764523_39776348	0/0	c0025	1535	1	0	0	1	0	0	copy fasta	OXCT2	chr1	39764523	39776348
OXER1_chr2_42757499_42769135	0/0	c0001	1155	176	22	24	114	3	13	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/1	c0002	1155	134	40	34	33	8	18	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	1/0	c0003	1155	73	3	16	33	6	14	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0004	1155	8	8	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0005	1155	6	5	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0006	1155	5	0	0	5	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0007	1155	5	5	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0008	1155	4	4	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0009	1155	3	3	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0010	1155	3	3	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0011	1155	2	0	1	0	0	1	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0012	1155	1	0	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0013	1155	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0014	1155	1	0	1	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0015	1155	1	0	0	1	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0016	1155	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0017	1155	1	1	0	0	0	0	copy fasta	OXER1	chr2	42757499	42769135
OXER1_chr2_42757499_42769135	0/0	c0018	1155	1	0	0	0	1	0	copy fasta	OXER1	chr2	42757499	42769135
OXGR1_chr13_96980713_96999476	1/1	c0001	1014	237	36	53	120	11	15	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0002	1014	191	43	22	88	7	31	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0003	1014	17	15	2	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0004	1013	12	0	0	12	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0005	1014	2	0	1	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0007	1014	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXGR1_chr13_96980713_96999476	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	OXGR1	chr13	96980713	96999476
OXLD1_chr17_81660036_81671605	1/1	c0001	444	328	76	64	128	16	42	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	c0002	444	69	13	3	48	2	3	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	c0003	444	3	2	1	0	0	0	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	c0004	444	1	1	0	0	0	0	copy fasta	OXLD1	chr17	81660036	81671605
OXLD1_chr17_81660036_81671605	0/0	c0005	444	1	0	0	0	0	1	copy fasta	OXLD1	chr17	81660036	81671605
OXNAD1_chr3_16260212_16311087	1/1	c0001	939	159	36	30	75	4	12	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0002	939	147	27	35	68	2	15	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0003	939	72	27	9	28	3	5	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0004	939	2	1	0	1	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0005	939	1	1	0	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0006	939	1	0	0	0	1	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0007	939	1	0	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXNAD1_chr3_16260212_16311087	0/0	c0008	939	1	0	1	0	0	0	copy fasta	OXNAD1	chr3	16260212	16311087
OXR1_chr8_106265190_106757694	1/1	c0001	2622	112	48	22	31	1	8	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0002	2622	49	15	10	19	1	4	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0003	2622	3	3	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0004	2622	2	2	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0005	2622	1	0	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694